Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00727 ATGGGAAGATCTCCTTGCTGTGATGAAAGTGGTTTGAAGAAGGGTCCTTGGACAACCGAGGAAGATCAGAAGCTTGTTAACCACATTCAAAAATATGGTCATGCAAGCTGGAGGGCACTTCCAAAACTTGCAGGACTCAACAGGTGTGGCAAAAGTTGCAGGTTAAGGTGGACGAACTACTTGAGACCTGACATTAAAAGAGGAAAGTTTTCCAAAGAGGAAGAACAAACAATTCTTGATCTCCATGCCATCCTCGGAAACAAATGGTCCGCAATAGCAAGTCACATACCTGGTAGGACAGATAATGAAATAAAGAATTTTTGGAACACTCATCTGAAGAAGAAGCTGATTCAAATGGGTTATGATCCAATGACACACCAGCCTCGAACTGATGATGTTCTCACAGGCTTGTCTCATCTCATAGCACTGGCTAACCTGAAACAACTTTTGGACAATCAGCATCAACCATGGGAACAGAACCTTGCAAGGCTTCAACAAGAGGCCATCCAATTAGCCACCCTCCAAAGCTTACAACAACACCTCCTGCACCCACAATTCACTGAGGCAGATCTTAACTCAGTTAATAGCATGACAAACAGTACCTTCATGATGAACCACGACAACGACAACGTCAATGTTTCAAATGATACCAGTGCTATGTCATGTAATGGAATTGGCAGAGTCCAATTGGCTAATGATTCCACCCCTTTCTCTCACATGCCTGAGTTGAAAACACCACCTTCTTCTTCTGTTGAATTGAGTGATAAGGACATGGTTCAATTACATCAAGGAGAAAATTACCCTAATTCTCCGTGGCTTTTTTCGTGTTCTAGCACTACCCCTTCTTCTCCTTCTTCCCATGTTGTTCCACCAGTGACGTCGGAGGTTTCATTCACTAATGTGGACGATAATTGCACCGTTTGGCCAGAGATCCTGCTAGAGGACCCTTTGTTCAGAATGATTTCCTAG 969 0.4345 MGRSPCCDESGLKKGPWTTEEDQKLVNHIQKYGHASWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSKEEEQTILDLHAILGNKWSAIASHIPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDDVLTGLSHLIALANLKQLLDNQHQPWEQNLARLQQEAIQLATLQSLQQHLLHPQFTEADLNSVNSMTNSTFMMNHDNDNVNVSNDTSAMSCNGIGRVQLANDSTPFSHMPELKTPPSSSVELSDKDMVQLHQGENYPNSPWLFSCSSTTPSSPSSHVVPPVTSEVSFTNVDDNCTVWPEILLEDPLFRMIS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00727 322 CDD SANT 69 112 IPR001005 -
Viun2g00727 322 CDD SANT 16 61 IPR001005 -
Viun2g00727 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun2g00727 322 SMART sant 13 63 IPR001005 -
Viun2g00727 322 SMART sant 66 114 IPR001005 -
Viun2g00727 322 FunFam MYB-related transcription factor 13 66 - -
Viun2g00727 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun2g00727 322 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun2g00727 322 FunFam Transcription factor MYB39 69 130 - -
Viun2g00727 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 241 - -
Viun2g00727 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun2g00727 322 Coils Coil 147 167 - -
Viun2g00727 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun2g00727 322 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun2g00727 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun2g00727 322 Gene3D - 69 116 - -
Viun2g00727 322 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00727 Viun-Chr2 17247760 17249242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00727 1 321 MYB Transcription Factor Family AT5G10280 50.000 5.36e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun2g00727 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00727 K09422 - gmx:100785374 454.136