Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00723 ATGTCTTCCAATAAGAACAAGGGAAACGCCGTTGGCGCAAAAACGGCAAGAGCCTGCGATTGCTGCATAAGAAATCGAGCGCGTTGGTACTGTGCCGCGGACGACGCGTTCCTCTGCCAAGCTTGTGACTCTTCCGTTCACTCAGCGAACCCATTAGCGCGTAGGCACCACCGCGTTCGCCTGAAAATCATTTCCCACATTAACTCCAGCAATACCTTATCTGCTGCAAAGAGTAACATTGGTGCTCCATCGTGGCACAAAGGGTTCGCCAAGAAACCCCGAACACCACGTCACGGGAAGCACACTAAGAAGAGTCTCAAGAGCGCCTTCAATGTGGTACCGGAAGTGTGTCCCCAAGACACGAATACGAATTCCCGTGAAGAGAGCATGGATCAGCTTCTTTATAGAGTGCCCGCAACTCCTTCATCGGAACAAGGGGTATCCGTGACCGATGAGAGGAAAGTTGATTTGTTAGGATGTGAAAGCGCGATTGAGATTGCGGAGTTTAGTGCCGATGTTGAGAGTTTGTTGGGGAAGGGGCTAGAGAGTGAGTTTGTGGGAATGGAAGAGTTGGAGCTGGTGGGTACCAAGGAGGTGGAGGAGCATGCTTCTTGGGAGTGTTGTGTGGACGGTGAGAATGTGAAGGTGGAGGACGAGGCGCTTGAATTGGGATTTCATTGTGGCAAGGAGTTGAATTTTTCGTTGACATGTGAAGACGTGAAAGAAAAGGTTGTTGAGTTGGATAAGAACCAGCAAGTACTTAAAGAAAATGATCAGCTGAAGAAGAAGATTCTATTGTTGCAGTTAGATTATGAGGCTGTAATCAGTGCTTGGAAGAGCCAAAAATCCCCATGGACTACTGCTCATAAACCAGACTTGGGCACTCAGCAGTTTTCGTCTCATTGCATGGGAACATGTGGAGTCGAGTTTTACCATCCTTGTGGGGAACTAAGTGAATTATCTGGGTGTCATTCAACAATGGCAGAGGAGGGAAGAGAAGCAAGAGTATTAAGATATAGAGAAAAGCGACGTAAGAGGTTGTTCTCGAAAAAAATAAGGTATGAGGTTCGAAAGAAGAATGCGGAGAAAAGACCCAGAATGAAAGGGAGGTTTGTAAAGAGACCTTCTTTACCGACACCAACCAGTGTTCCCTTGTTAAACAGAAAATAA 1170 0.4701 MSSNKNKGNAVGAKTARACDCCIRNRARWYCAADDAFLCQACDSSVHSANPLARRHHRVRLKIISHINSSNTLSAAKSNIGAPSWHKGFAKKPRTPRHGKHTKKSLKSAFNVVPEVCPQDTNTNSREESMDQLLYRVPATPSSEQGVSVTDERKVDLLGCESAIEIAEFSADVESLLGKGLESEFVGMEELELVGTKEVEEHASWECCVDGENVKVEDEALELGFHCGKELNFSLTCEDVKEKVVELDKNQQVLKENDQLKKKILLLQLDYEAVISAWKSQKSPWTTAHKPDLGTQQFSSHCMGTCGVEFYHPCGELSELSGCHSTMAEEGREARVLRYREKRRKRLFSKKIRYEVRKKNAEKRPRMKGRFVKRPSLPTPTSVPLLNRK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00723 389 Coils Coil 237 270 - -
Viun2g00723 389 SMART bboxneu5 14 61 IPR000315 GO:0008270
Viun2g00723 389 ProSiteProfiles CCT domain profile. 332 374 IPR010402 GO:0005515
Viun2g00723 389 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Viun2g00723 389 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 376 - -
Viun2g00723 389 CDD Bbox1_BBX-like 18 61 - -
Viun2g00723 389 MobiDBLite consensus disorder prediction 84 104 - -
Viun2g00723 389 MobiDBLite consensus disorder prediction 90 104 - -
Viun2g00723 389 MobiDBLite consensus disorder prediction 358 389 - -
Viun2g00723 389 Pfam CCT motif 332 374 IPR010402 GO:0005515
Viun2g00723 389 Pfam B-box zinc finger 17 58 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00723 Viun-Chr2 17124621 17126524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00723 5 374 C2C2-CO-like Transcription Factor Family AT1G25440 42.054 5.18e-83 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Viun2g00723 CCT 2.6e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00723 - - vun:114173052 764.222