Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00718 ATGCTGGAGGGTCTTAATCAATCGGCTAAAACGATGAAGAAACTGAAGCAGAAGCGAAATCCATTTCATGACTCCAAAATGACGAGGAAACTGCGCATCATTTGTGACGATCCTGATGCTACCGATTCATCATCGGATGAAGAGGAGCATTTTCGGAAGGGTAGGAAGGTGAAGAGAACTATGGTGGAGATTGCTCTTCCATCACTTCCAGTTAACTCTGTCATTGCAGCTGAAACCAGCACCGAGAGTTCCAACAATGAGGAACTGAACAAGAAGAGGGTTTTGGCCAAAACTCCCTCTGTGAGGAGGCAATCTTGCGGCAAATACAAAGGTGTTCGGATGAGGAAATGGGGCAAATGGGCTGCAGAAATTCGCGATCCTTTCAAGGGTGCGCGTGTCTGGTTGGGCACTTACAACACTGCAGAAGAGGCTTCTCAGGCCTATGAGACCAAAAGGCTTGAATTTGAAGCCATGGCCAAGGCTTTGTCTGGTGAGAGGAGCAGCAACAACAACATCATCATCAACAACAACAGCAACAACAACGTTGTTGCATCTGTTGTAACTGTGGCTGCCTCAGAGAAGAACAACTCCAACTACAGTGTTTCTTCTGGTGCAGCAGAATCTGCAACAGACTCCAAGTCTGCTACTAATACTATCGACTACTCAGATAGTAGTATCCTGTCACACACATCACCATATTCTGTGCTTGAGTTGGATACCTCTGCTTCCGATTTGACTGTGAGTGGTAAAGTTTCATGCAATGAAGTTGTTGAGACTAAAGGTTTGGAGGCTGAAGGTGTTGAAACTGAATTTGCTGAGCTAGATATTCCTGATTTGAGTATGCTGAGTGTGCCACCCCAATCTGTGGTTGCTGGCAATGGTGCTGCTCCATCTGAGTTTGAATTTGATTGGTTTGCATTAGACAGTTTGGAGCATGGATTTGATGATGATCTTGCTGGCTTGGAAGACATTCAGATTTATGGGTTTGATGAGGGTGAGCCTAGTGAGCTTCCTGATTACGATTTTGATGACATTTGTGCTGATGAGTTTGCTGGTTGGATCGAAGAACCCCTTAATATACCTTGCGTATAA 1092 0.4505 MLEGLNQSAKTMKKLKQKRNPFHDSKMTRKLRIICDDPDATDSSSDEEEHFRKGRKVKRTMVEIALPSLPVNSVIAAETSTESSNNEELNKKRVLAKTPSVRRQSCGKYKGVRMRKWGKWAAEIRDPFKGARVWLGTYNTAEEASQAYETKRLEFEAMAKALSGERSSNNNIIINNNSNNNVVASVVTVAASEKNNSNYSVSSGAAESATDSKSATNTIDYSDSSILSHTSPYSVLELDTSASDLTVSGKVSCNEVVETKGLEAEGVETEFAELDIPDLSMLSVPPQSVVAGNGAAPSEFEFDWFALDSLEHGFDDDLAGLEDIQIYGFDEGEPSELPDYDFDDICADEFAGWIEEPLNIPCV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00718 363 Gene3D AP2/ERF domain 107 163 IPR036955 GO:0003700|GO:0006355
Viun2g00718 363 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 228 - -
Viun2g00718 363 SMART rav1_2 108 178 IPR001471 GO:0003700|GO:0006355
Viun2g00718 363 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Viun2g00718 363 CDD AP2 108 148 IPR001471 GO:0003700|GO:0006355
Viun2g00718 363 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Viun2g00718 363 MobiDBLite consensus disorder prediction 1 28 - -
Viun2g00718 363 SUPERFAMILY DNA-binding domain 108 155 IPR016177 GO:0003677
Viun2g00718 363 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Viun2g00718 363 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00718 Viun-Chr2 16942827 16945347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00718 11 362 AP2-EREBP Transcription Factor Family AT1G68550 32.500 6.54e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun2g00718 AP2 6.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00718 - - var:108335041 564.303