Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00687 ATGGCCTACGGCGATGGCCATGATTCACGGCGCAAGCACCGCCAATCCTCTGCTCCGAAGGACGCCGACAGATCCTCGAAGCGCCACCGCCACCGCCGCCGCCATGGAAGCAGAAAACACGGCGAAGAAAGTGAACGCGATTGCGAAACCGCCGATTGTGAAACTGCTCCGTTGGCTACTTCTCAGATTCTGCATTGTAGCTCTGGCACGAATCGTCGCGCCCCCGATGATGACGATGTCGAGGAGGGAGAAATTCTCGAAGAAGACGGTGCCGACATCGCGAAGCTAGACGCTCGATCTGATGCTAAGCCTGCTGAAACTGGCGTGCCCGGAGATCGAGATGATCAATCCAATACCTCAAATCTGGGACATTTTGTCAGGGAGACTTTGTTGCATGCCGAAGATTTAAAAACTAGAACACGGTGTATTGTTGATGATAAATTTATTAGTCCTGAATGTGAAGATGAGGCGTGCCGAAGGAGTCACTTTGGCAGTGAAATACACGAAGATGGTACGGGCAATGGCCTTTTGGATGGGAAGGATGATGGAACTAGTACATATTCTATGGGCAATGGACTTTTGAAGAATAAATCTTCGGGAAGGGACATGCGGCATGGTGGGGAATATGAATGTTTTAAGGGAAATGAAACACATAACGGTTATTGTGATGACGAGGACGTAGAGTTGGAGGGACAGAATGTTGGTTACTATATAATCTCTTCCTCAGAAAGTGGAGGAGAGAAATATAGAAGATCAAGAAGGTCATGTTCTCGTGATAGATATAGAAGTCCATCAAGATCAAATGGTCGTGCCAAGGACGGGTCTCGTTCTGGAAGTATAGCAGAAAAACATGCTCATTCAAAGAGAAGGCACCCTGATGAACAGGGGGGGCTTTCATATTGTGGTAGACTGGAGACTTACTACGGCCTTGATGATGAAGGAATGATGGCAAGCAGATGGGAGAATAGGGATTTGGTGGACAAAAGAAGCGAACACAGAGCAAGTTATCATGTTGTGGAGGCTCGGGATAGGGGTAGGGATAGGAATAGGAGTAGGGACAAAGATGTCAAGAGAGACTTAAAGATGGAAAAAGAACAAGAGAGTTGGGTGTTTAGAAGGGAGAAAGAACATGAAAGGAGCCATGAGAGGCACAAAAGGAATGGAGAAGAAGAGAGGAGGCAGAGAGAGGATTATAGGGACAGGAGAAGAGAAAAGGAAGTAGATAGGAGCTGTGAGACAGTGTTTGAGAGGGATAGGAGAAGGGAAAAGGAAAGATATCGAAGTAGAGAGAGAACAAGGGGTGATGAGAGAGATAGGGAGCGGGAGACTGCTGAACATGATGATAAGGGTTGGGAAAGAGATAAAATTAAGGAGAGGGAGAAGCGAGAGGATAGAGAGAGGCGCACAGGCAGAGACACTTTGAATTGCATGGGTAAGTATCTGCCTCATGAAGATGATTATGATAGTCGTGATAGGCATAAAATGCAGACAAAACAAGAAGAAATAGAAGACCACCAAAAAAGTAAAAAGAACTCCTTGCCTGTAATGGTTTATGATGAAAACAAACTACAAAGGGAGGATGAACAAGATGAGTTAGATGAGAAGGTTACATTGCAATCACCTGATCAAGAAGAAGAACATTTCAATAGGGTTAAAGAAGAGAGTAGAAGGAGAAGGGAGGCAATCTTAGAGAAATACAAGAAGCAGCAGCAACAAGTGCAACAAAATACAGAAAACAAAATAAAAGAGATTCCTCCTACCGTTCCTGATGTTCTCGATGATGTGGAAGTGGAAACATTATTCTCAGTCAGGAAATCTCCTCTGGTAAATGGGGTCGTTGCTTCTAATATGATCTCTTGCTCTGGGGCCCTTAGAGAGGGTACACCAAAGAGTAAAGAAGCTGATGACGAATTTTGTGATGATATATTTGGTGAGACACCAACTGGAGCTCAGAAATCAGGTAAAGGAGAAGGTTTAAGAATTGAGAATGGTGGCCTACATGATAATTGGGATGATGCAGAGGGTTATTACAGTTATCGATTTGGTGAAATACTTGATGGCCGGTATGAAGTCATTGCTGCTCATGGGAGAGGTGTCTTTTCAACAGTAGTCCGGGCAAAGAATCTTAAAAGTATTAGTGGTGAACCTGGAGAAGTTGCCATAAAAATAATTCGTAGTAATGACACAATGTACAAGGCTGGTATGGATGAATTGGTTATATTAAAGAAATTAGTAGGTGCTGATCCAGATGATAAGCGTCATTGTGTTCGTTTCCTTTCTAGTTTCAAGTACAGGAATCACCTCTGTTTAGTTTTTGAATCTCTCCATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACTGCAGTTAGAGTGTATGCTAAACAACTTTTTATTGCACTGAAGCATCTCCGGAACTGTGGTGTTCTCCATTGTGATATAAAACCAGATAATATGTTGGTGAATGAGGCTAAAAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACGCCATATCTAGTGAGTCGCTTTTATCGTGCCCCTGAAATCATACTTGGTTTAACCTATGATCATCCATTGGATATGTGGTCTGTAGGATGTTGTTTGTATGAGCTCTATACAGGGAAAGTTCTTTTTCCAGGTTCTACAAACAATGACATGCTACGGCTCCATATGGAACTGAAGGGCCTTTTTCCTAAAAAGATGCTTCGGAAGGGAGCATTTATTGAACAGCATTTTGATCAGGACCTGAATTTTCTTGCTACAGAGGAGGACCCTGTGACAAAAAAGGCAATAAAGCGGATGATTAGCCAATTTCAAGGATCTTCTCGAAAAGGTTTTTGTATTGGATCCAGACAAGAGGTTGACAGTCTCACAGGCATTGAATCACCCGTTCATCACTGGCAAGTGAACAATGTGCTGATTTTGACTACCAAAATGATGTTCACTGATTTCTGTACATAG 3009 0.4307 MAYGDGHDSRRKHRQSSAPKDADRSSKRHRHRRRHGSRKHGEESERDCETADCETAPLATSQILHCSSGTNRRAPDDDDVEEGEILEEDGADIAKLDARSDAKPAETGVPGDRDDQSNTSNLGHFVRETLLHAEDLKTRTRCIVDDKFISPECEDEACRRSHFGSEIHEDGTGNGLLDGKDDGTSTYSMGNGLLKNKSSGRDMRHGGEYECFKGNETHNGYCDDEDVELEGQNVGYYIISSSESGGEKYRRSRRSCSRDRYRSPSRSNGRAKDGSRSGSIAEKHAHSKRRHPDEQGGLSYCGRLETYYGLDDEGMMASRWENRDLVDKRSEHRASYHVVEARDRGRDRNRSRDKDVKRDLKMEKEQESWVFRREKEHERSHERHKRNGEEERRQREDYRDRRREKEVDRSCETVFERDRRREKERYRSRERTRGDERDRERETAEHDDKGWERDKIKEREKREDRERRTGRDTLNCMGKYLPHEDDYDSRDRHKMQTKQEEIEDHQKSKKNSLPVMVYDENKLQREDEQDELDEKVTLQSPDQEEEHFNRVKEESRRRREAILEKYKKQQQQVQQNTENKIKEIPPTVPDVLDDVEVETLFSVRKSPLVNGVVASNMISCSGALREGTPKSKEADDEFCDDIFGETPTGAQKSGKGEGLRIENGGLHDNWDDAEGYYSYRFGEILDGRYEVIAAHGRGVFSTVVRAKNLKSISGEPGEVAIKIIRSNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLRLTAVRVYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLTYDHPLDMWSVGCCLYELYTGKVLFPGSTNNDMLRLHMELKGLFPKKMLRKGAFIEQHFDQDLNFLATEEDPVTKKAIKRMISQFQGSSRKGFCIGSRQEVDSLTGIESPVHHWQVNNVLILTTKMMFTDFCT 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00687 1002 Pfam Protein kinase domain 690 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00687 1002 PANTHER DUAL SPECIFICITY PROTEIN KINASE 420 948 - -
Viun2g00687 1002 MobiDBLite consensus disorder prediction 422 510 - -
Viun2g00687 1002 Coils Coil 381 401 - -
Viun2g00687 1002 MobiDBLite consensus disorder prediction 1 121 - -
Viun2g00687 1002 MobiDBLite consensus disorder prediction 89 110 - -
Viun2g00687 1002 SMART serkin_6 689 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00687 1002 MobiDBLite consensus disorder prediction 276 296 - -
Viun2g00687 1002 MobiDBLite consensus disorder prediction 248 300 - -
Viun2g00687 1002 MobiDBLite consensus disorder prediction 340 403 - -
Viun2g00687 1002 MobiDBLite consensus disorder prediction 422 513 - -
Viun2g00687 1002 ProSiteProfiles Protein kinase domain profile. 689 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00687 1002 Gene3D Transferase(Phosphotransferase) domain 1 749 982 - -
Viun2g00687 1002 MobiDBLite consensus disorder prediction 179 195 - -
Viun2g00687 1002 SUPERFAMILY Protein kinase-like (PK-like) 676 936 IPR011009 -
Viun2g00687 1002 CDD STKc_PRP4 688 955 IPR044092 GO:0004674|GO:0006468|GO:0045292
Viun2g00687 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
Viun2g00687 1002 MobiDBLite consensus disorder prediction 38 52 - -
Viun2g00687 1002 MobiDBLite consensus disorder prediction 1 24 - -
Viun2g00687 1002 Gene3D Phosphorylase Kinase; domain 1 659 748 - -
Viun2g00687 1002 Coils Coil 552 583 - -
Viun2g00687 1002 MobiDBLite consensus disorder prediction 168 201 - -
Viun2g00687 1002 FunFam Serine/threonine-protein kinase PRP4 homolog 749 974 - -
Viun2g00687 1002 MobiDBLite consensus disorder prediction 248 269 - -
Viun2g00687 1002 MobiDBLite consensus disorder prediction 55 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00687 Viun-Chr2 16541298 16556687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00687 696 911 MAP Kinase Gene Family AT2G46070 35.294 1.65e-21 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Viun2g00687 Pkinase 4.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00687 K08827 - gmx:100776908 924.85