Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00648 ATGAGTGACAAAAAGAAGTTTGAGGTGGATAGAAACGAGGATCCTATGGGTTATTCTAGTGGTATGCACTCGGATTGGAGATTCGAGGGTGCAAATCTTGCAAATTCTTCTGCAGGTTTGGTTGCCATGGGAAATTCTATGAACGCCAGCAGAGGGGATTTGATTGGTTCGTCTTCATGTTCCTCTGCTTCAATGGTGGACTCTTTTGGTGCAAGCTACTGGGACAACACCACCGGCTCCCAAAACCTGGGATTTTGTGACTTTAATGTCCACAACAATGGGGGTTCTTCAAATACTGCTGGAATAAGAAAAGAGGGCTTTGGCTTTGGAAGAGTTGCTCAGGTTCATCATGGAACACTTGAAATGGCTTGGAACCCTGCTAATTCTATGGTACCGAATGGCCCAGGGTTGTTTCCGCACAGTTTATCTCAGTTTCCAACTGATTCTGGATTCATCGAGAGAGCTGCAAGATTCTCATGTTTCAGTGGAGGGAATTTTACTGATATGGTGAACTCATATGGTATTGCTCAATCAACGGGGGTTTATGGAGCAAGAGATGCTATTGCAGGACATGGGTTGAAATCTGTAACTGAAGGGCAATCTCAAGGAGGTGATATGAATGTAGTTGAAGCTACGAAAGATTTGTCTCCATCTGTTGAGCATCTGGCTTCTAAAGGAAGCCCTCTCAAGAGTGATAAAAGAAGTGAAGGTCATATTATGTCTCAAGATGATGGGAAGCTATCTCTTGTTAGGCCTGCTAATGAGTCTGATAGAGCTGAATCTAGTGATGATGGTGGTGGCCAGGATGATTCTCCATTGTTGGAAGGTGCTAGTGGCGAGCCTTCAATCAAAGGGCTAAACTCAAAGAAAAGGAAAAGAAGTGGGCTGGACGCTGATAATGGGAAAGGCAATGGAGCTACAGAAATTCCTAATGATGCTGCTCAGGACAACTCTGAGAATCAACAGAAGGTAGACCATCAACCAATTCCAGCAACCAAGTCTTCAGGGAAGAATGCCAAACTAGGGTCTCAAGCTTCTGATCCACCGAAGGAGGAATACATACATGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTTAGGAGGGAAAAGATAAGTGAAAGGATGAAGTTTCTTCAAGACCTTGTACCGGGATGCAGCAAGGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAATCACTTCAGAGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACAGTAAATCCGCGGCTGGATTTTAATATTGAAGGACTTCTTGCAAAAGATATTCTTCAACATCGGCCAGGTCCTTCTTCTGGTCTAGGATTTCCTCTAGATATATCCATGGCTTTTCCTCCATTACATTCATCTCAACCAGGGCTGATTCATCCAATTATTCCCAACATGGCAAACTCAGCTGACATTCTTCAAAGAAACATCCATCAACAGTTAGCTCCCTTGAATGGTGAATTGAAGGAGCCAAATCAGCTATCTGATGCATGGGACGATGAGCTTCACAACGTCGTACAGATGAGTTTTGCAACAACTACTTCCCTGAGTAACCAACATGTTGATGGTACTGTGTCAGCAAGTCAGATGAAAGTTGAACTTTGA 1650 0.4382 MSDKKKFEVDRNEDPMGYSSGMHSDWRFEGANLANSSAGLVAMGNSMNASRGDLIGSSSCSSASMVDSFGASYWDNTTGSQNLGFCDFNVHNNGGSSNTAGIRKEGFGFGRVAQVHHGTLEMAWNPANSMVPNGPGLFPHSLSQFPTDSGFIERAARFSCFSGGNFTDMVNSYGIAQSTGVYGARDAIAGHGLKSVTEGQSQGGDMNVVEATKDLSPSVEHLASKGSPLKSDKRSEGHIMSQDDGKLSLVRPANESDRAESSDDGGGQDDSPLLEGASGEPSIKGLNSKKRKRSGLDADNGKGNGATEIPNDAAQDNSENQQKVDHQPIPATKSSGKNAKLGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILQHRPGPSSGLGFPLDISMAFPPLHSSQPGLIHPIIPNMANSADILQRNIHQQLAPLNGELKEPNQLSDAWDDELHNVVQMSFATTTSLSNQHVDGTVSASQMKVEL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00648 549 MobiDBLite consensus disorder prediction 226 241 - -
Viun2g00648 549 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 362 412 IPR011598 GO:0046983
Viun2g00648 549 MobiDBLite consensus disorder prediction 250 265 - -
Viun2g00648 549 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 360 431 IPR036638 GO:0046983
Viun2g00648 549 Gene3D - 359 432 IPR036638 GO:0046983
Viun2g00648 549 SMART finulus 368 418 IPR011598 GO:0046983
Viun2g00648 549 FunFam Basic helix-loop-helix transcription factor 359 431 - -
Viun2g00648 549 Pfam Helix-loop-helix DNA-binding domain 365 413 IPR011598 GO:0046983
Viun2g00648 549 CDD bHLH_AtBPE_like 352 437 - -
Viun2g00648 549 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 252 480 IPR024097 GO:0006355
Viun2g00648 549 MobiDBLite consensus disorder prediction 310 342 - -
Viun2g00648 549 MobiDBLite consensus disorder prediction 217 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00648 Viun-Chr2 16175823 16180374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00648 1 525 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 41.682 6.37e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun2g00648 HLH 7.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00648 - - gmx:100797720 936.021