Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00645 ATGGCCTCAAAACCTACAAGTTTTAGCATCCAGCTGACTCTGATGGTAGTTTTTCTGACAACCCAAGTTGTGTTGTCTGCCGATACACCAATGCCTTCTGATAAGACTCAATTAGGACAATGGTTTTCAAATAATGTAAAGCCTTTAAATAACAGAAAGGGTACTCTAGACAGTCAATTAGTAGCTGCTGAACAAGGTCAGACGGTGATTAAGGTAAGGCAAGATGGCAAAGGGCAATTCAAGACAATCACTGATGCCCTTAAAAGCATACCTAACGGGAACAAAAAGCGTGTAATTTTGCATATTGGACCTGGAACTTACAAAGAGAAAATCGTTGTTCCAAATAACAAACCTTTCATCACCTTCTATGGGACCCCAGGGCAAATGCCAACATTGACCTATGGGGGCACGGCAAAACAATATGGCACTGTTGAAAGTGGTACATTATCTGTTTTATCAGACTATTTTGTGGGGGCAAACATAATAATACGGAACTCCGCACCAAGACCTGGTCTAAACACGGTAGGAGGTCAAGCAGTTGCATTACGAGTTTCTGGAGACAAAGCCACATTTTATAATTGCCAGATTTATAGTTACCAAGATACATTGTTGGATGATGCAAATAGACATTTTTTCAAAGACTGCTACATTCAAGGAACTGTTGATTACATTTTTGGGAGTGGAAAGTCACTATATGTGAATTGTGAAATAAGAACGCTAGGCGATTCAGGGCTTACTTTTATAACAGCACAAGCAAGGAAAAGTAACAAAGAAGACAATGGCTTCTCCTTTGTCCATTGTGAACTTACTGGAACTGGAACAGGTGCTTACTTGGGAAGAGCATGGTTTGGTTATTCCACAGTGATCTTTTCTTATTGTAACATGGACAACATTTTCAACAAGGCAGGGTGGAGTAACAATAATCACAAGGAATATGACAAAACTCTTTATTTTGGGGAGTATATGAACACAGGACCTGGTGCAGATGCCACAGGACGTTCTCATTTGACAAGAAAACTTAAATACGCAGAGGTTCAGCATTACCTTGGTCTTGGTATGATAGAAGGCTCAAAATGGTTACTTCCTCCTCCTAAAGTATGA 1101 0.3996 MASKPTSFSIQLTLMVVFLTTQVVLSADTPMPSDKTQLGQWFSNNVKPLNNRKGTLDSQLVAAEQGQTVIKVRQDGKGQFKTITDALKSIPNGNKKRVILHIGPGTYKEKIVVPNNKPFITFYGTPGQMPTLTYGGTAKQYGTVESGTLSVLSDYFVGANIIIRNSAPRPGLNTVGGQAVALRVSGDKATFYNCQIYSYQDTLLDDANRHFFKDCYIQGTVDYIFGSGKSLYVNCEIRTLGDSGLTFITAQARKSNKEDNGFSFVHCELTGTGTGAYLGRAWFGYSTVIFSYCNMDNIFNKAGWSNNNHKEYDKTLYFGEYMNTGPGADATGRSHLTRKLKYAEVQHYLGLGMIEGSKWLLPPPKV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00645 366 Pfam Pectinesterase 71 336 IPR000070 GO:0030599|GO:0042545
Viun2g00645 366 FunFam Pectinesterase 65 362 - -
Viun2g00645 366 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
Viun2g00645 366 SUPERFAMILY Pectin lyase-like 67 360 IPR011050 -
Viun2g00645 366 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 59 360 - -
Viun2g00645 366 Gene3D - 68 363 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00645 Viun-Chr2 16130745 16132451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00645 6 366 Carbohydrate Esterase AT1G69940 50.139 1.10e-135 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00645 K01051 - gmx:100813174 510.375