Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00638 ATGGCTGGACCGTCATGGTTGGTTGACAAAAGTAGAATTGCGACCAAAATAAAATGTGCATCAGGAACGTGTGATCCTGGAAAGATTATATGGAGCAGCAATCCTACAAAGCCTTGCCCAAATTGTCAACATGATATTGACAACAGTGATGTAGCACAAGAGTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAGGAGATAATCTGGCACTTGCTTGCAAAAGTGGGGGTAGAAGGTTCCATACCTCATCCTTTCATTGATGAATTTATTACTAGTCTTGAAGAAGATGATGGGATTTGCTATACTCATCCTAAAAATTTACCTGGTATTAAGAAAGATGGAAGTGCTTCCTTCTTTTTTCATAGAGCAATCAAGGCTTATAACACTGGCAACCGAAAGCGTCGAAAGATAGCAAGTCAAGATTTTGGTGATGCCCGCTGGCACAAGACTGGAAAGACTAAACCAGTTGTCTTGGATGGGGCTCGAAAAGGCTGGAAAAAGATTATGGTTCTGTATGAAAATAATATAGGAGGAGGAAAAGTTGAAAAAACTAATTGGGTTATGCATGAATATCACCTAGGAGCAAAAGAAGATGAAAATGATGGGGAGTACATTTTCTCTAAAGTGTTTTACCAGCAACAAGTGAAATTAGGTGATAAAGATGACCAAGATGTTACTGAAGCAACTGAATCAACAGAAGCAACAATTGTGAAGGTGGTTCCAAACACTCCCAAATTGGTGACACTTGATCCTCCTAGCAGCAAAAGGCATTGTGCAGATCTGGACCATGTACAAGAAACACATAACAGTCTACAGCTGTCTGAGATGGATTGCTTACATGAAATTGAAGATGATTGCCAAGAACTTGCAACTGAATCTCAAAGTGATGAAGGGGTGGAAAATAAAGAAAGTAATGCTGAGGAAGGCCAGAAATGGTGGGACAGCGAGTCACAGAATATGTTGAGTTCGCAACAACTGGTTGAAGCTCTGACTTTGTGTGACGATATCCTCTACAGCCAGTCTCCCAGTAGAGATGGAAAACATGAAGATCATAATGGCCAGCCTGGTCTTGGTGTTTATGCTGATCTAGGACCAGAATGTCTGAAGAAGGATATTGAAGAGTGTCAACGTCTTGTCCTTGATCCTTCAAATATAGTGAATGATAACCCTGCAGAGATTCGACTAAGTCAGCTGGAATTTAGTTCACAGGACAGCTTTATTTCCTGGGGATACAAGGCTGTGAACTAA 1260 0.4095 MAGPSWLVDKSRIATKIKCASGTCDPGKIIWSSNPTKPCPNCQHDIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGVEGSIPHPFIDEFITSLEEDDGICYTHPKNLPGIKKDGSASFFFHRAIKAYNTGNRKRRKIASQDFGDARWHKTGKTKPVVLDGARKGWKKIMVLYENNIGGGKVEKTNWVMHEYHLGAKEDENDGEYIFSKVFYQQQVKLGDKDDQDVTEATESTEATIVKVVPNTPKLVTLDPPSSKRHCADLDHVQETHNSLQLSEMDCLHEIEDDCQELATESQSDEGVENKESNAEEGQKWWDSESQNMLSSQQLVEALTLCDDILYSQSPSRDGKHEDHNGQPGLGVYADLGPECLKKDIEECQRLVLDPSNIVNDNPAEIRLSQLEFSSQDSFISWGYKAVN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00638 419 MobiDBLite consensus disorder prediction 299 314 - -
Viun2g00638 419 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Viun2g00638 419 FunFam NAC domain-containing protein 8 67 220 - -
Viun2g00638 419 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 380 IPR044799 GO:0003700
Viun2g00638 419 SUPERFAMILY NAC domain 44 216 IPR036093 GO:0003677|GO:0006355
Viun2g00638 419 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Viun2g00638 419 MobiDBLite consensus disorder prediction 294 316 - -
Viun2g00638 419 Gene3D NAC domain 67 220 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00638 Viun-Chr2 15867544 15871915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00638 23 220 NAC Transcription Factor Family AT1G28470 52.941 5.27e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun2g00638 NAM 7.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00638 - - gmx:100799488 681.019