Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00636 ATGGCCACTGTTGCAACTACAGGAATTGGAGTAGGAGTAACCAAGCTCCAACAAACCCAAATACCAAAGCACAAGTCCTTGTTTCTTGGCCAGAGGCTTAGGATTAGACCCTCTGGGGAGGCTCAATGCAGTGCAAGATTCAATTTTTCAAACCCAAGAGTGGTTAAAGTTTTTGCACTAGGGGGTGAATGGATGGATACAGTTCACAACCTTTTTGTGGGTGTTGGGGTTGGACTTCCTTGCAGTGTGATGCAGTGTGGAGATGTAATCTATAGGAGCACTCTTCCCAAGTCCAATGGCTTGACACTTACTGTCCCTGGGGTGATTCTGGCTTTGGGCACTCTATCTTACCTTTGGGCCACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCCTTTGTTGAGAGGTTGTTCCGACCCAGTTACAAGAAGGATGATTTTGTTCTGGGCAAGAAGTTGGGGGAGGGATCGTTTGGAGTGGTTTATAGAGTTTCACTGGCCAATAAACCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATATGGATGAATGAGCGTGTACGAAGAGCTTGTGCAAGCAGCTGTGCAGATTTTGTCTATGGTTTTCTTGAGAGCTCTTCAAAGAAATCTGCTGAATACTGGCTTATATGGCGGTTTGAAGGGGATGCCACCCTAGCTGACTTGGTGCAGAGTAGAGAGTTTCCATATAATGTTGAAACATTAATTTTGGGTGAGGTTCAAGACTTGCCCAAGGGATTGGAAAGAGAAAATAGAATCATTCAGACAATCGTGAGGCAGATCTTGTTTGCACTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAGAACATTATTTTCTCCGAAGAGTCTCGGACATTCAAAATCATTGATCTTGGAGCTGCTACAGACCTGCGAGTGGGCATAAACTACATTCCAAAGGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAGCAGTACATCATGAGCACACAAACTCCTTCAGCACCCTCAGTTCCAGTTGCAGCTGCACTTTCCCCAGTCTTATGGCAGTTGAATTCGCCAGACAGATTCGACATCTATAGTGCTGGTTTAATCTTTCTACAAATGGCTTTCCCTGGTCTAAGAACTGATAATAGCCTCATTCAATTCAACCGTCAACTAAAGAGGTGTGACTATGACATAGTTGCTTGGAGAAAAACTGTAGAGCCTCGATGCGGCCCTGAACTAAGGAAGGGCTTTGAGCTGTTGGATTTGGATGGTGGAATAGGATGGGAACTTCTAAAATCAATGGTAAGGTACAAAGCAAGACAAAGACTGAGTGCAAAAGCAGCATTGGCTCATCCTTACTTTGACAGAGAAGGCTTGTTGGCATTGTCTTTTATGCAAACACTGAGGCTGCAGCTCTTGCGTGCAACTCAACAGGACTATGGAGAAGCTGCCAAGTGGATTACTAATCTAATGGCAAAATCAGGGACTCAGAAGGATGGTGGATTCACTGAAGCTCAGCTTCAGGAACTAAGAGAAATTGAACCCAAAATGAAGGCCAGTGCACCAAGAAATGCTTTAGCTTCAGCTCTTAAACTTCAGAGGAAAATTATAAGAACCTTAAATGAGAGTATGGATGAGCTCAACAGACGCAGGAAAAGCTTTTGGTGGAGCAGATGGATCCCAAGAGAAGAATGA 1737 0.4439 MATVATTGIGVGVTKLQQTQIPKHKSLFLGQRLRIRPSGEAQCSARFNFSNPRVVKVFALGGEWMDTVHNLFVGVGVGLPCSVMQCGDVIYRSTLPKSNGLTLTVPGVILALGTLSYLWATPGVAPGFFDMFVLAFVERLFRPSYKKDDFVLGKKLGEGSFGVVYRVSLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACASSCADFVYGFLESSSKKSAEYWLIWRFEGDATLADLVQSREFPYNVETLILGEVQDLPKGLERENRIIQTIVRQILFALDGLHSTGIVHRDIKPQNIIFSEESRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSVPVAAALSPVLWQLNSPDRFDIYSAGLIFLQMAFPGLRTDNSLIQFNRQLKRCDYDIVAWRKTVEPRCGPELRKGFELLDLDGGIGWELLKSMVRYKARQRLSAKAALAHPYFDREGLLALSFMQTLRLQLLRATQQDYGEAAKWITNLMAKSGTQKDGGFTEAQLQELREIEPKMKASAPRNALASALKLQRKIIRTLNESMDELNRRRKSFWWSRWIPREE 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00636 578 FunFam Serine/threonine-protein kinase STN7, chloroplastic 259 473 - -
Viun2g00636 578 Gene3D Transferase(Phosphotransferase) domain 1 259 472 - -
Viun2g00636 578 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 58 553 - -
Viun2g00636 578 SUPERFAMILY Protein kinase-like (PK-like) 146 473 IPR011009 -
Viun2g00636 578 ProSitePatterns Protein kinases ATP-binding region signature. 156 183 IPR017441 GO:0005524
Viun2g00636 578 ProSiteProfiles Protein kinase domain profile. 150 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00636 578 SMART serkin_6 150 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00636 578 Coils Coil 544 564 - -
Viun2g00636 578 Pfam Protein kinase domain 152 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00636 578 CDD STKc_SNT7_plant 154 468 - -
Viun2g00636 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
Viun2g00636 578 Gene3D Phosphorylase Kinase; domain 1 137 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00636 Viun-Chr2 15803485 15811317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00636 268 469 Core Cell Cycle Gene Families AT2G38620 30.047 2.91e-16 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Viun2g00636 Pkinase 3.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00636 - - gmx:100778588 1026.54