Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00631 ATGGAGTGCATGGATGAGAGTACCACCACTGAATCACTCTCCATCAGCCTATCTCCCACCGTCTCATCGGAGGACAAGCTCCTTCTGCCTTCGCCGATGCTTTCGTCCAAGAATCCTTCTCCTACGCCGCCGTCCACCACGTTGTGTCGCGTCGGCAGCGGCGCCAGCGCAATCGTAGATCCTGACTGCGCCGGCGGCGGGAACACCGAGGCCGAGTCCAGGAAGCTTCCCTCGTCCAAGTACAAAGGCGTCGTGCCGCAGCCCAACGGGCGCTGGGGCGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTGGGAACCTTCAACGAGGAAGACGAGGCGGCCAGGGCGTACGACATCGCGGCGCAGCGCTTCCGCGGAAAGGACGCGGTCACCAACTTCAAGCCGGTCTCCGGCGGCGCCGGAGACGGCGACGACGACGACGGCGAGGTTGAGTTTCTCAGCTCGCATTCCAAGTCGGAGATCGTCGACATGCTCAGAAAACACACGTACAATGACGAGCTGGAGCAGAGCAAGCGCAGCCGCGGAGTCGTACGGCGGCGCGGCGGAGCCGCCGCCGCCGGAACCGGTAACTCGATCGGTGGCGCGTGTTTTGTGAAGGCGCGTGAGCAGCTGTTCGAGAAGGCGGTTACGCCGAGCGACGTGGGGAAGCTGAATCGGTTGGTGATCCCGAAGCAGCACGCGGAGAAGCACTTCCCGTTGCCGAGCGTTAACGGCGTTAGCGCGACGGCGGCGAAGGGCGTTTTGTTGAACTTCGAAGACGTCGCGGGGAAAGTGTGGCGCTTCCGCTACTCGTATTGGAATAGTAGCCAGAGCTACGTTTTGACCAAAGGTTGGAGCCGGTTCGTTAAGGAAAAGAATCTGAAAGCCGGTGACACGGTCTGTTTTCACCGGTCCACCGGACCGGACAAGCAGCTGTATATCGATTGGAAGGCGCGGAATAATAATGTTAACGAGGTTGGGTTGTTCGGACCGGTCGGACCGGTGGTGGAACCGATTCAGATGGTTCGGCTCTTCGGCGTTAACATTTTGAAACTACCCGGTTCGGAGGCCAATGGTAACAATAATGCAAGCGGAACTATTCCCGGGTTCTGCAATGGCAAAAGAAGAGAAATGGAGCTGTTTTCGTTGGAGTGTAGCAAGAAACCTAAGATTATTGGTGCTTTGTAA 1191 0.5852 MECMDESTTTESLSISLSPTVSSEDKLLLPSPMLSSKNPSPTPPSTTLCRVGSGASAIVDPDCAGGGNTEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPVSGGAGDGDDDDGEVEFLSSHSKSEIVDMLRKHTYNDELEQSKRSRGVVRRRGGAAAAGTGNSIGGACFVKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPSVNGVSATAAKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKARNNNVNEVGLFGPVGPVVEPIQMVRLFGVNILKLPGSEANGNNNASGTIPGFCNGKRREMELFSLECSKKPKIIGAL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00631 396 Gene3D - 204 328 IPR015300 -
Viun2g00631 396 MobiDBLite consensus disorder prediction 1 84 - -
Viun2g00631 396 Pfam AP2 domain 79 127 IPR001471 GO:0003700|GO:0006355
Viun2g00631 396 Pfam B3 DNA binding domain 213 318 IPR003340 GO:0003677
Viun2g00631 396 SUPERFAMILY DNA-binding domain 79 135 IPR016177 GO:0003677
Viun2g00631 396 CDD B3_DNA 212 306 IPR003340 GO:0003677
Viun2g00631 396 ProSiteProfiles AP2/ERF domain profile. 80 135 IPR001471 GO:0003700|GO:0006355
Viun2g00631 396 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 75 364 IPR044800 GO:0003700
Viun2g00631 396 Gene3D AP2/ERF domain 79 136 IPR036955 GO:0003700|GO:0006355
Viun2g00631 396 SMART rav1_2 80 141 IPR001471 GO:0003700|GO:0006355
Viun2g00631 396 SMART B3_2 213 321 IPR003340 GO:0003677
Viun2g00631 396 MobiDBLite consensus disorder prediction 1 25 - -
Viun2g00631 396 ProSiteProfiles B3 DNA-binding domain profile. 213 321 IPR003340 GO:0003677
Viun2g00631 396 FunFam AP2 domain-containing protein RAP2.8 79 136 - -
Viun2g00631 396 CDD AP2 79 137 IPR001471 GO:0003700|GO:0006355
Viun2g00631 396 SUPERFAMILY DNA-binding pseudobarrel domain 211 316 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00631 Viun-Chr2 15588084 15589696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00631 3 396 B3 DNA Binding Superfamily AT1G25560 58.128 1.55e-144 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Viun2g00631 B3 2.9e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00631 K09287 - gmx:100801107 598.201