Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00627 ATGCAAACTCACCCTTTCTCCTACATATCTTCCTCTCCTGCTACTAATGCCTTCTTGGAACAACCTCATCATCATCATCATCATCATCAAGAGGTTGTAGATGAAGCTTCCATCTCCCTCTCTCTCGGCCCTCCCGGCCAACACCACCACCACCACCCCAAAGGCGGCTCCTCCTCCTCCTCCTCAAATCTGCACCATTATCGGCATAACCCTACCTCCGATGACCAGAGAGGTGTAACTGTGGCCCTTCACATTGGCCTTCCCAATACCACCGCTTCACCTAACACTCCCACCACCACCACCACCACCACCAAGCCTGATCTTCATTTGGCTTCTGCTCCCATTCAGGGCCAGTACTGGATCCCTTCTCCGGCTCAAATCCTCATCGGACCCACCCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCACATGTGGGGACACGGTTCGCAATATAGGAAAGGACCTGAATCGCTGAGAGGAGCAAAACCAGCTTCGTCAATGCTGAGGCTTCCCTGCTATTGTTGTGCTGAGGGTTGCAAAAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAGGATTTCAGGACTCTTCAGACTCACTACAAGAGGAAGCATGGAGCAAAGCCTTTTGGGTGCAGAAAGTGTGGCAAGCCTTTTGCTGTGAGAGGGGATTGGAGGACACACGAGAAAAACTGTGGTAAGCTTTGGTTCTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCCCTCAAAGACCATGTTCGTGCCTTTGGTGATGGCCATGCTCCTCACACTGTCGAGAGTTGTGATCAGATTGGGGAGGATGACTTGTTTGGTGACGAAGATGAAGAGGAGTTGGATTTAGAAGATGATGATGAAGGTTATAACAGTAATGAAGTGGTTTTTGGTTTTAATTAA 945 0.491 MQTHPFSYISSSPATNAFLEQPHHHHHHHQEVVDEASISLSLGPPGQHHHHHPKGGSSSSSSNLHHYRHNPTSDDQRGVTVALHIGLPNTTASPNTPTTTTTTTKPDLHLASAPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQIGEDDLFGDEDEEELDLEDDDEGYNSNEVVFGFN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00627 314 Gene3D Classic Zinc Finger 176 266 - -
Viun2g00627 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 161 IPR013087 -
Viun2g00627 314 SUPERFAMILY beta-beta-alpha zinc fingers 202 239 IPR036236 -
Viun2g00627 314 ProSitePatterns Zinc finger C2H2 type domain signature. 136 156 IPR013087 -
Viun2g00627 314 SUPERFAMILY beta-beta-alpha zinc fingers 117 155 IPR036236 -
Viun2g00627 314 PANTHER ZINC FINGER PROTEIN WIP2 12 288 IPR043584 GO:0003700|GO:0010468
Viun2g00627 314 FunFam Zinc finger protein WIP2 188 270 - -
Viun2g00627 314 MobiDBLite consensus disorder prediction 86 106 - -
Viun2g00627 314 MobiDBLite consensus disorder prediction 22 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00627 Viun-Chr2 15420567 15422333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00627 34 275 C2H2 Transcription Factor Family AT1G13290 72.428 3.19e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun2g00627 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00627 - - gmx:100791558 464.151