Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00626 ATGCTTCCCCGGAAAATGGGGTTCCGTGAGTACATCGAAGCATTGGAGGAAGAAAGGAGAAAAATTCAAGTTTTCCCCAAAGAGCTTCCTCTGTCGTTGGAGCTTGTCACGCAAGCAATTGAGGGGTGCAGGCAGCAATTGTCTGGAACGGTTACGGAGTACAATTTGAATGGTCAATCGGAGTGTTCGGAGCAGACATCAACGGATGAAGGACCTGTTTTTGAAGAGTTCATTCCTATTAAGAAAAGAGCGTCTCAAGATTCTGTTGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAAATGAAGATGAAGATGAGCAACATTCTCATCACCACAAAAAAACCACTTCTGATAAAAAGAAATCAGATTGGCTTAGATCCGTTCAGTTGTGGAATCCCAATCCCCCTCCTACCAAAGAGGATGTGCCCAGAAAAGCAAATGTTGTTGAAGTGAAGAGAAACGGTGGAGCTTTTCAACCGTTCCAAAGAGAGGAAAAAAGTGTTGTGGTTAACGGAAAGGCTAATAATTATGCACCAGCAATTGGTAAAGCACCGTCTTCACCACCAGTTCCTGCTACAAGTTCCACAGGACCAGTGAGAATAATAGACAGCAAAAAAGAGGAGAAAGGACAGACTCAGAGAAAGCAACGACGATGTTGGTCACAGGAATTGCACAAGCGATTCTTGCATGCCCTTCAGCAACTTGGTGGTGCAGATTCTGCCACGCCCAAACAGATCAGGGAGCTAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGCCACTTGCAGAAATTTCGTCTGCATACGAGAAGAAGTCCCATAATGCACAACAACGGAAATTCACAAGCAGCACCTTTGTTTCTTGTGGGGAACATTTTTGTGCAGCCACCAGAATATGGTGCAGTGGCTACCTCAACAGCTTCTGGAGGAGAATTGACAACAGTTACTGCTCCAACTGGAATATACACACCTGTGGCTGCACATCCTCCACCTGTCACAAACACACCAATAATGAACCATTCACATTCTCAAGAAAGGCCTAACAATAATCACAGTGCTCAATCAAACTCACCTGCCTCATCATCTTCCACACACACAATCACAACTACTTCATATGTCCCTTGA 1131 0.443 MLPRKMGFREYIEALEEERRKIQVFPKELPLSLELVTQAIEGCRQQLSGTVTEYNLNGQSECSEQTSTDEGPVFEEFIPIKKRASQDSVEEEEEEEEEEENEDEDEQHSHHHKKTTSDKKKSDWLRSVQLWNPNPPPTKEDVPRKANVVEVKRNGGAFQPFQREEKSVVVNGKANNYAPAIGKAPSSPPVPATSSTGPVRIIDSKKEEKGQTQRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIMHNNGNSQAAPLFLVGNIFVQPPEYGAVATSTASGGELTTVTAPTGIYTPVAAHPPPVTNTPIMNHSHSQERPNNNHSAQSNSPASSSSTHTITTTSYVP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00626 376 Gene3D - 214 272 - -
Viun2g00626 376 Pfam Myb-like DNA-binding domain 217 266 IPR001005 -
Viun2g00626 376 MobiDBLite consensus disorder prediction 201 219 - -
Viun2g00626 376 Coils Coil 81 109 - -
Viun2g00626 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 272 IPR017930 -
Viun2g00626 376 MobiDBLite consensus disorder prediction 325 376 - -
Viun2g00626 376 MobiDBLite consensus disorder prediction 89 104 - -
Viun2g00626 376 FunFam Myb family transcription factor 214 272 - -
Viun2g00626 376 MobiDBLite consensus disorder prediction 105 125 - -
Viun2g00626 376 NCBIfam myb-like DNA-binding domain, SHAQKYF class 215 270 IPR006447 GO:0003677
Viun2g00626 376 MobiDBLite consensus disorder prediction 336 376 - -
Viun2g00626 376 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 351 IPR044787 GO:0003700|GO:0006355
Viun2g00626 376 SUPERFAMILY Homeodomain-like 212 273 IPR009057 -
Viun2g00626 376 MobiDBLite consensus disorder prediction 60 143 - -
Viun2g00626 376 MobiDBLite consensus disorder prediction 180 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00626 Viun-Chr2 15246152 15248653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00626 10 333 G2-like Transcription Factor Family AT1G68670 49.563 1.13e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun2g00626 Myb_DNA-binding 2.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00626 - - gmx:100819750 531.946