Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00598 ATGGCAGTAGAATATGAAGTTGAGCATCCAAGGAAGGCTTATGGATGGGCAGCAAGGGATGCCTCTGGTGTTCTCTCCCCATTTTTCTTCTCCAGAAGGAAAACAGGTGTGAAAGATGTAACGTTCAAGGTTTTGTATTGTGGAATATGTCATTCTGACCTTCACAAGTTGAAGAATGAATGGAGTGATTCCATTTATCCACTTGTTCCTGGACGTGAGATTGTTGGAGAAGTGACAGAGGTGGGAAGCAAAGTGGAAAAGTTTAAGGTTGGAGACAAGGTGGCCGTGGGATGCTTGGTTGGGTCTTGTTCCTCATGCCAAAACTGTGTCAACAATCTTGAGAATTACTGCCAGCAAGGGATTCCCACATATGGTGGGAAGTATGTGGATGGAAGCATCACGTATGGGGGATTCTCTGACTTCATGGTTGCAGATGAACACTTTGTTGTCAACATTCCAAATGGCCTACCACTTGATGCTGCTGCTCCTCTCCTCTGTGCAGGGATCACAGTGTATAGTCCTTTGAGATATTTTGGCATTGACAAACCTGGTATGCACCTGGGAGTGGTTGGCCTTGGTGGATTGGGTCATTTGGCTGTCAAGTTTGCAAAGGCCCTTGGCTTGAAGGTCACTGTCATTAGTACCTCTCCTAATAAGAAACAAGAAGCCATTCAACATCTTGGAGCAGATTCCTTTGTGCTCAGTACAGACCAAGATCAAATGAAGGCTGCAATGTGCACCTTGGATGGTATAATTGACACTGTTTATGCAGTTCATCCTCTCATGCCCTTAATTGATCTGTTGAAGTCTCACGGGAAGTTAGTGACGGTTGGGGTGCCACTAAAGCCTGTGGAGTTGCTACTCCCGTCTTTGGTTTTAGGAAGAAGAAGTGTAGCGGGTAGTTACTTTGGAGGAATAAAGGAGACACAAGAAATGATGGATTTCGCTGCAGAACACAATGTTAGACCTGAAATTGAGATAATTCCTATGGATTATGTTAACACAGCAATGGAGCGTCTACTCAAAGCCGATGTTAAGTATCGATTTGTTATTGACGTTGGGAACACATTGAAGTCTTACCCTTCTACTACTTTGGAGTGA 1101 0.4432 MAVEYEVEHPRKAYGWAARDASGVLSPFFFSRRKTGVKDVTFKVLYCGICHSDLHKLKNEWSDSIYPLVPGREIVGEVTEVGSKVEKFKVGDKVAVGCLVGSCSSCQNCVNNLENYCQQGIPTYGGKYVDGSITYGGFSDFMVADEHFVVNIPNGLPLDAAAPLLCAGITVYSPLRYFGIDKPGMHLGVVGLGGLGHLAVKFAKALGLKVTVISTSPNKKQEAIQHLGADSFVLSTDQDQMKAAMCTLDGIIDTVYAVHPLMPLIDLLKSHGKLVTVGVPLKPVELLLPSLVLGRRSVAGSYFGGIKETQEMMDFAAEHNVRPEIEIIPMDYVNTAMERLLKADVKYRFVIDVGNTLKSYPSTTLE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00598 366 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Viun2g00598 366 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
Viun2g00598 366 Gene3D - 167 323 - -
Viun2g00598 366 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Viun2g00598 366 Gene3D - 16 353 - -
Viun2g00598 366 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Viun2g00598 366 PANTHER ALDEHYDE REDUCTASE 6 356 IPR047109 GO:0016616
Viun2g00598 366 FunFam Putative cinnamyl alcohol dehydrogenase 6 324 353 - -
Viun2g00598 366 FunFam Uncharacterized protein 16 166 - -
Viun2g00598 366 CDD CAD1 15 352 IPR047109 GO:0016616
Viun2g00598 366 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Viun2g00598 366 SUPERFAMILY GroES-like 21 184 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00598 Viun-Chr2 14667611 14671338 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00598 11 362 Monolignol Biosynthesis Gene Families AT4G37990 67.045 5.10e-159 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00598 K23232 - gmx:100812491 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00598 2 14667611 14671338 Viun2g00598 2 14667611 14671338 ECH