Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00592 ATGTTTGGCTCCATGTTGTCCTTCCATTTTCTACTCTCTTGTTTCATGCTTCTTGTCTTGGTTGCAGCTAATTGGGAACCCCAAGACGATTGTCCTTCTTCTCCTCAACCATGTGGCTATCTGGGGAAAATCTTCTTCCCCTTCACAACAAGCTCCAATCCAAAATGTGGGTTGCGAATAAGTGGCTGTGAAGACGACGGTGCAGTCAAACAAATCTCACTGGGAGGCAAAAAATTGTATAAAATTGATGCCATAATAAATCCTTTGGACCTCAATTACCTTTCAATTTTCATCCATTACCCTGATCTTGACACCGTTGCTACAGAGCAGCAGCGTATACAGCCTTCTGAGATAGAAAACGAGTATTTCACGATCGCTAACAATATTACCTTCTTCGGATGCTCTCTCAACCCCAACGAAATCACAAATTCAATCCCTTCAAACATGACTTTATACAGACATTGCCAAAACCACAGCATGTACTATAATTCTTCCCATTCGTTCGACTATCCCATGCCCAACATTCCATTCGCGTGCTTGCTTTTTCCGGTTTGTCCATGTGGAACCTTTTGCAATTGCCCTTCATTTACATTTCTATTTTCTATTCTCCAAATTAAATTAAAAATACCCAAAAATTGCAAACACTGTCATGGCCTCTGTAAGTTTAACTTTGAAGGACAACGCCTCAATTGTGATGGACAACCACCTCGTCTTTCCCAGCCCCCGGTTCCTCCACCTGCAACGGCTAAGGCTAAGAAAATAGGAAGAAAGAAACGTTCAGGCCTCCAAAGCAAATCAAGAAGCGCTTATTCTTCTTCCTTCAGAAATACAACGTCCATGGAAAGTGGAGGTGTCTACTTTGGGATCTCTGTCTTCTCCTTCGACGAGCTCCGAGAGGCAACCAATAATTTTGTTGAAGACAGGAAGCTTGGAGAAGGAGGCTTTGGAATCGTTTACTTCGGAAAACTTAGAGATGGTCGTGAAGTTGCAGTGAAGCGGCTGTTCGAGCGCAACTACAGGCCAGTGGAGTCATTCATCAATGAAATCCAGATCCTCACACGTCTGCGACACAGAAACCTTGTGTCCCTCTATGGCTGCACTTCGCGTCACAGCCGGGACTTAATGCTAGTGTACGAGCACATCCCAAATGGCACTGTTAGCTCTCATCTCCACGGTGATCAAAGAAATTCAAGCTTTCTGCCATGGCATTTGAGAATGAAAATTGCCATACAAACTGCTAGTGCATTGGCTTATCTCCACGCTTCTGACATCATTCACCGGGATGTGAAAACCACCAACATTCTCCTGGACAATTCGTTTGATGCTAAGGTTACGGATTTTGGTCTTTCAAGGCTGTTCCCTGATGATGTCACCCACGTTTCCACTGCTCCAAGAGGGACCCCTGGTTATGTTGATCCGGATTATCGCCTATGCTACCAGCTGACAACAAAGAGTGATGTATATAGCTTTGGGGTTGTGCTTGTTGAGTTAATATCATCTCTCAAAGCAGTTGACATGGACAGGAACAGGGAAGACATTAAGTTGGCAAATCTTGCCATTAGGAAGATTCAAAAGGGTGCCTTTTATGAGTTGGTCGATCCTTCCCTTGGTTTCCACTCAGATGAGAAACTAAAAATGATGATAGGTTCGGTGGCAGAGTTGGCTTTTCGGTGTCTGCAAGAAGACAAGGAATTGAGACCCTCTATGGGTGAAGTATTGGAGGTGCTGGAGAGAATTCACAGTGGCAGGGATGAGCCACCGAATCAGGATGGAATTGTCGTTAATGGTGCTATAAGGGCTTCTCAAAGCTATGTTCATCCACCTCTTCCAAACACTCTGATAAACCCACAACAGCGCCTTTTCAAAACAAACTGA 1875 0.4427 MFGSMLSFHFLLSCFMLLVLVAANWEPQDDCPSSPQPCGYLGKIFFPFTTSSNPKCGLRISGCEDDGAVKQISLGGKKLYKIDAIINPLDLNYLSIFIHYPDLDTVATEQQRIQPSEIENEYFTIANNITFFGCSLNPNEITNSIPSNMTLYRHCQNHSMYYNSSHSFDYPMPNIPFACLLFPVCPCGTFCNCPSFTFLFSILQIKLKIPKNCKHCHGLCKFNFEGQRLNCDGQPPRLSQPPVPPPATAKAKKIGRKKRSGLQSKSRSAYSSSFRNTTSMESGGVYFGISVFSFDELREATNNFVEDRKLGEGGFGIVYFGKLRDGREVAVKRLFERNYRPVESFINEIQILTRLRHRNLVSLYGCTSRHSRDLMLVYEHIPNGTVSSHLHGDQRNSSFLPWHLRMKIAIQTASALAYLHASDIIHRDVKTTNILLDNSFDAKVTDFGLSRLFPDDVTHVSTAPRGTPGYVDPDYRLCYQLTTKSDVYSFGVVLVELISSLKAVDMDRNREDIKLANLAIRKIQKGAFYELVDPSLGFHSDEKLKMMIGSVAELAFRCLQEDKELRPSMGEVLEVLERIHSGRDEPPNQDGIVVNGAIRASQSYVHPPLPNTLINPQQRLFKTN 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00592 624 SMART serkin_6 304 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00592 624 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 592 IPR044652 GO:0004672
Viun2g00592 624 MobiDBLite consensus disorder prediction 234 269 - -
Viun2g00592 624 SUPERFAMILY Protein kinase-like (PK-like) 286 589 IPR011009 -
Viun2g00592 624 Gene3D Transferase(Phosphotransferase) domain 1 381 585 - -
Viun2g00592 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Viun2g00592 624 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Viun2g00592 624 Pfam Protein kinase domain 305 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00592 624 Gene3D Phosphorylase Kinase; domain 1 276 380 - -
Viun2g00592 624 CDD STKc_IRAK 310 579 - -
Viun2g00592 624 FunFam Wall-associated receptor kinase-like 20 381 588 - -
Viun2g00592 624 ProSiteProfiles Protein kinase domain profile. 304 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00592 Viun-Chr2 14515358 14517936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00592 278 590 Receptor kinase-like Gene Family AT1G25390 63.057 1.80e-135 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Viun2g00592 Pkinase 2.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00592 - - var:108334729 991.875