Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00590 ATGACTCCCCCCTGCAACATCCGTTTCTGTAAGATTATCCCCGGAACAAGTCTTGCACATGGGTTACTGAAACTTCCAGGAAAATTCACTGCAAAATGTGGAGATGGCATGTCAAATCCAGTGTTCCTCAACCTTCCAGATTGTACTGAATGGAAAATACAGTGGACTAAGCATGATGGTGAGATTTGGTTTCAAGAAGGATGGAAGGAGTTTGCAACACGCTATTCTCTAGATCATGGTCACATGCTGTTTTTTGAATACGTGGGAATTTCTCGTTTTGATGTCCACATATGTGACAAAAGTGCTGTTGAAATAGACTACCGTTCCCACTTCACTCATGACAACCCTGATAATTCTGTTGAAACTTTGGATGAACAATTTCATGATGAAACAGACAACATTGTGCAGATTAGTGATGATTCTGAGCAAATTTTGGATGAGCAATGTATCCGAAAGAGCGGAGTCAAAAATACACAGTCACCTTCTCAACCCTGTAAGAAAATGAAGAATAGCATCACTACAGATGCTGGACGAAGCCCCAATGGGGTAAATTTGCATCAGCATGATCAAAGTAGAAGTGCTGGTTTGCAAAAGCAAAAATTTACGAAGCAGAAGTTAGAAGAAGAAAAGGGAAAAAGCATTTTTCATGGTGAATGCCCAAAAGTGGAGCAATTAACTTCCTCGGTTTTAAACAGAGCGACGAGTACTTCTAAATCCATGCATCCTTCTTTCAAGCTTGTTATGAGGCCATCCTTTATCAATGCAGATTACCTGGTTATTCCGTCAGAATTTTCAGAACAATATTTGAAGAAAAAAACAAAAGCAGTTGTCCTTGAGGTCATGGATGGGAGAAGTTGGCCTGTAATTTTGTCTGGTCCTAGAATTACTGCTGGATGGCCGAATTTTGCATCAGAAAATAATCTGAAAGTGGATGATGTCTGTGTGTTTGAGCTGATAACGAAGATCCAGAGTCTGGCCTTCAGAGTTTCCATTATCCCATCTGCAGGAAAACCTAGCACACCCATTTTACATGATCATTCAAAAAGCAGAAAAGTGCATCCTGCAACTACCTCTAGAGGTGGGAGTTCAAGTGTAAGAACTTTAGTAGGCAAACGTGAAGAAGCCAGAGAATTCTCATCAGAAAATCCCTTTTTCATGAGCACTCTAAGTTGGCAAGGAAACACAACCAGATGCCCGGTGAGGTTTAGTTAA 1212 0.4068 MTPPCNIRFCKIIPGTSLAHGLLKLPGKFTAKCGDGMSNPVFLNLPDCTEWKIQWTKHDGEIWFQEGWKEFATRYSLDHGHMLFFEYVGISRFDVHICDKSAVEIDYRSHFTHDNPDNSVETLDEQFHDETDNIVQISDDSEQILDEQCIRKSGVKNTQSPSQPCKKMKNSITTDAGRSPNGVNLHQHDQSRSAGLQKQKFTKQKLEEEKGKSIFHGECPKVEQLTSSVLNRATSTSKSMHPSFKLVMRPSFINADYLVIPSEFSEQYLKKKTKAVVLEVMDGRSWPVILSGPRITAGWPNFASENNLKVDDVCVFELITKIQSLAFRVSIIPSAGKPSTPILHDHSKSRKVHPATTSRGGSSSVRTLVGKREEAREFSSENPFFMSTLSWQGNTTRCPVRFS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00590 403 ProSiteProfiles B3 DNA-binding domain profile. 8 101 IPR003340 GO:0003677
Viun2g00590 403 CDD B3_DNA 242 333 IPR003340 GO:0003677
Viun2g00590 403 ProSiteProfiles B3 DNA-binding domain profile. 243 335 IPR003340 GO:0003677
Viun2g00590 403 CDD B3_DNA 8 99 IPR003340 GO:0003677
Viun2g00590 403 Gene3D - 4 102 IPR015300 -
Viun2g00590 403 SUPERFAMILY DNA-binding pseudobarrel domain 238 332 IPR015300 -
Viun2g00590 403 Gene3D - 223 335 IPR015300 -
Viun2g00590 403 MobiDBLite consensus disorder prediction 153 201 - -
Viun2g00590 403 PANTHER B3 DOMAIN-CONTAINING 8 322 - -
Viun2g00590 403 MobiDBLite consensus disorder prediction 340 368 - -
Viun2g00590 403 SUPERFAMILY DNA-binding pseudobarrel domain 5 108 IPR015300 -
Viun2g00590 403 SMART B3_2 9 101 IPR003340 GO:0003677
Viun2g00590 403 SMART B3_2 244 335 IPR003340 GO:0003677
Viun2g00590 403 Pfam B3 DNA binding domain 14 100 IPR003340 GO:0003677
Viun2g00590 403 Pfam B3 DNA binding domain 244 332 IPR003340 GO:0003677
Viun2g00590 403 MobiDBLite consensus disorder prediction 153 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00590 Viun-Chr2 14494871 14499381 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00590 9 330 B3 DNA Binding Superfamily AT3G18990 28.107 1.25e-34 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun2g00590 B3 1.7e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00590 - - vun:114174485 460.299