Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00588 ATGACTCCCCCCTGCAACATCCGTTTCTGTAAGATTATCCCCGGAACAAGTCTTGCACATGGGTTACTGAAACTTCCAGGAAAATTCACTGCAAAATGTGGAGATGGCATGTCAAATCCAGTGTTCCTCAACCTTCCAGATTGTACTGAATGGAAAATACAGTGGACTAAGCATGATGGTGAGATTTGGTTTCAAGAAGGATGGAAGGAGTTTGCAACACGCTATTCTCTAGATCATGGTCACATGCTGTTTTTTGAATACGTGGGAATTTCTCGTTTTGATGTCCACATATGTGACAAAAGTGCTGTTGAAATAGACTACCGTTCCCACTTCACTCATGACAACCCTGATAATTCTGTTGAAACTTTGGATGAACAATTTCATGATGAAACAGACAACATTGTGCAGATTAGTGATGATTCTGAGCAAATTTTGGATGAGCAATGTATCCGAAAGAGCGGAGTCAAAAATACACAGTCACCTTCTCAACCCTGTAAGAAAATGAAGAATAGCATCACTACAGATGCTGGACGAAGCCCCAATGGGGTAAATTTGCATCAGCATGATCAAAGTAGAAGTGCTGGTTTGCAAAAGCAAAAATTTACGAAGCAGAAGTTAGAAGAAGAAAAGGGAAAAAGCATTTTTCATGGTGAATGCCCAAAAGTGGAGCAATTAACTTCCTCGGTTTTAAACAGAGCGACGAGTACTTCTAAATCCATGCATCCTTCTTTCAAGCTTGTTATGAGGCCATCCTTTATCAATGCAGATTACCTGGTTATTCCGTCAGAATTTTCAGAACAATATTTGAAGAAAAAAACAAAAGCAGTTGTCCTTGAGGTCATGGATGGGAGAAGTTGGCCTGTAATTTTGTCTGGTCCTAGAATTACTGCTGGATGGCCGAATTTTGCATCAGAAAATAATCTGAAAGTGGATGATGTCTGTGTGTTTGAGCTGATAACGAAGATCCAGAGTCTGGCCTTCAGAGTTTCCATTATCCCATCTGCAGGAAAACCTAGCACACCCATTTTACATGATCATTCAAAAAGCAGAAAAGTGCATCCTGCAACTACCTCTAGAGGTGGGAGTTCAAGTGTAAGAACTTTAGTAGGCAAACGTGAAGAAGCCAGAGAATTCTCATCAGAAAATCCCTTTTTCATGAGCACTCTAAGTTGGCAAGGAAACACAACCAGATGCCCGCGTGTGCCGAGAAACTTTGCGAGGAAGTATTTCCTAGGGATGAATCATGATTCGATAATGATGCAGTTCAGAAATATACTGTGGCCTGTAACCATTGTATTAACTAAAAGTGATTTATCAGGCACGCTTTCTGCTGGGTGGCCCACGTTTTCAAGAGCAAATAAACTGCGAGCTGGAGATGTTTGTGTCTTTGAGTTGGTCAACAGAGATGTTATGACACTCGATGTTCATGTTTTTAGAGATCACAGTGAGGTGATGCATTAA 1461 0.4086 MTPPCNIRFCKIIPGTSLAHGLLKLPGKFTAKCGDGMSNPVFLNLPDCTEWKIQWTKHDGEIWFQEGWKEFATRYSLDHGHMLFFEYVGISRFDVHICDKSAVEIDYRSHFTHDNPDNSVETLDEQFHDETDNIVQISDDSEQILDEQCIRKSGVKNTQSPSQPCKKMKNSITTDAGRSPNGVNLHQHDQSRSAGLQKQKFTKQKLEEEKGKSIFHGECPKVEQLTSSVLNRATSTSKSMHPSFKLVMRPSFINADYLVIPSEFSEQYLKKKTKAVVLEVMDGRSWPVILSGPRITAGWPNFASENNLKVDDVCVFELITKIQSLAFRVSIIPSAGKPSTPILHDHSKSRKVHPATTSRGGSSSVRTLVGKREEAREFSSENPFFMSTLSWQGNTTRCPRVPRNFARKYFLGMNHDSIMMQFRNILWPVTIVLTKSDLSGTLSAGWPTFSRANKLRAGDVCVFELVNRDVMTLDVHVFRDHSEVMH 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00588 486 ProSiteProfiles B3 DNA-binding domain profile. 8 101 IPR003340 GO:0003677
Viun2g00588 486 CDD B3_DNA 242 333 IPR003340 GO:0003677
Viun2g00588 486 ProSiteProfiles B3 DNA-binding domain profile. 243 335 IPR003340 GO:0003677
Viun2g00588 486 CDD B3_DNA 8 99 IPR003340 GO:0003677
Viun2g00588 486 Gene3D - 223 335 IPR015300 -
Viun2g00588 486 Gene3D - 369 482 IPR015300 -
Viun2g00588 486 SMART B3_2 9 101 IPR003340 GO:0003677
Viun2g00588 486 SMART B3_2 244 335 IPR003340 GO:0003677
Viun2g00588 486 SMART B3_2 385 481 IPR003340 GO:0003677
Viun2g00588 486 MobiDBLite consensus disorder prediction 340 366 - -
Viun2g00588 486 CDD B3_DNA 383 479 IPR003340 GO:0003677
Viun2g00588 486 PANTHER B3 DOMAIN-CONTAINING 377 482 - -
Viun2g00588 486 MobiDBLite consensus disorder prediction 153 201 - -
Viun2g00588 486 ProSiteProfiles B3 DNA-binding domain profile. 384 481 IPR003340 GO:0003677
Viun2g00588 486 Pfam B3 DNA binding domain 244 332 IPR003340 GO:0003677
Viun2g00588 486 Pfam B3 DNA binding domain 397 479 IPR003340 GO:0003677
Viun2g00588 486 Pfam B3 DNA binding domain 14 100 IPR003340 GO:0003677
Viun2g00588 486 SUPERFAMILY DNA-binding pseudobarrel domain 238 332 IPR015300 -
Viun2g00588 486 SUPERFAMILY DNA-binding pseudobarrel domain 378 479 IPR015300 -
Viun2g00588 486 Gene3D - 4 102 IPR015300 -
Viun2g00588 486 MobiDBLite consensus disorder prediction 153 200 - -
Viun2g00588 486 SUPERFAMILY DNA-binding pseudobarrel domain 5 108 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00588 Viun-Chr2 14494526 14499377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00588 361 479 B3 DNA Binding Superfamily AT3G18990 32.800 7.96e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun2g00588 B3 2.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00588 - - ccaj:109791753 550.051