Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00580 ATGTGTCATTTTCCTCCATCGAAGACGAACACAATCAGTGATTACCTGGTGGTGAAAAGTAAGGACACTGTATTGAAGCACGCTTCATTAAATGTTGCTTTCAGGCACGTCGTTCATGTTGTTCATATGATGGAGACAACACTTGATGATATTTCTCTTGAAGAATACAATGATGGTGCCCAGTCTGTGATGGACGACCAAATTGTTGACAATGACAACGATGTGGACCTTGTTCCGAGAGTTCACATGTGTTTCGAGACACTTGATGCAGTTAAAAATTTTTACAGAGACTTTGCGATTAGAACTAGATTTGGTATTAGAATAAGAAGTTCAAAGAAGGGAAAGGACAACGAACTTAAATATGTTAAACTTGTCTGTTGTCGTGAAGGTAATTATGTATCCACCATACGTCCAGAGGTTAAGACACTACCTAGCCAAACCAAGCAATGTCAAGCTGGAATATCGGTTGGTAAAAAAGATGGGAAATGGCACATAAGAAATGTTGTCATGGAACACAGTTACAATATTAGTCCTATAGAATCAAGGCTGATATTAGGAAATCGAAAAGTTAATATTCATGCTAGGCAAACAGTTGACATCAACGACGAAGCCGGGGTCCGTATCAACAAGAGTTATTGTTCACTGGTGTGCGAAGTTGGAGGATATGAAAATGTTACTTTTATTGAGCGAGATGTTAGGAATTACATAGCTCATAAAAGAAGGCAATTATGCAAGGATGGGGATGGACAAGCTTTGCTTCGACACTTTTCCCACATGCGTGAAGTCAACAATGATTTCTTCTTTGTAATTGACATGGACGAAGACAATAGAATATCAAATGTTTTTTTGGCGGATTCAAGGAGTCGAGCGGCATGCGAGTATTTTGGTGATGTTGTATCGTTTGACACAACATATTTGACAAACAAGTACGACATGCCATTTGCACCGTTTGTTGGTGTTAATCACCACGGGCAATCAATTTTATTGGGGTGTGGTCTAGTATCTGCAGAGGACACATCAACATTTGTATGGTTGTTTAGGTGTTGGTTACGTTGCATGTCCAACAGGGCACCTGAAGGGATCATCACTGACCAGTGCAAAGCTATGCGCAATGCAATTCAAATTGTTTCCCCTAACACTAATCATAGATGGTGCCTTTGGCATATAATGAAAAAGGTTCCGGAAAAATTGTAG 1194 0.397 MCHFPPSKTNTISDYLVVKSKDTVLKHASLNVAFRHVVHVVHMMETTLDDISLEEYNDGAQSVMDDQIVDNDNDVDLVPRVHMCFETLDAVKNFYRDFAIRTRFGIRIRSSKKGKDNELKYVKLVCCREGNYVSTIRPEVKTLPSQTKQCQAGISVGKKDGKWHIRNVVMEHSYNISPIESRLILGNRKVNIHARQTVDINDEAGVRINKSYCSLVCEVGGYENVTFIERDVRNYIAHKRRQLCKDGDGQALLRHFSHMREVNNDFFFVIDMDEDNRISNVFLADSRSRAACEYFGDVVSFDTTYLTNKYDMPFAPFVGVNHHGQSILLGCGLVSAEDTSTFVWLFRCWLRCMSNRAPEGIITDQCKAMRNAIQIVSPNTNHRWCLWHIMKKVPEKL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00580 397 Pfam FAR1 DNA-binding domain 93 176 IPR004330 -
Viun2g00580 397 PANTHER OS01G0519700 PROTEIN 68 397 - -
Viun2g00580 397 Pfam MULE transposase domain 298 392 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00580 Viun-Chr2 14360806 14362569 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun2g00580 MULE 2.4e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00580 - - vun:114165601 518.85