Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00553 ATGGACAATAATGTGTTAGGTATTCTCAAACTTCGAATCATAAAAGGCATTAATCTTGCAATTCGTGATACACGTGCCAGTGATCCTTATGTCGTCGTCAGAATGGGTGATCAGAAGCTGAAGACTCGTGTTATAAAAAACAACTGCAATCCTACGTGGAATGAAGAACTGACCCTTTTCGTAAAGGATGTTAATATTCCATTACATCTGACAGTTTATGATAAAGACACTTTCACTGTGGATGACAAAATGGGTGAGGCAGAGGTAGACTTTATACCCTTTCTTAGGTGTAAGAAGATGGAATTGAAAAACCTTCCAAATGGTTGTGCAGTGAAAAGGATCCAACCAAATAGAAGTAATTACCTTGCTGAAGAGAGCAGTTGTGTTTGGAATGATGGTGATATTGTCCAACAAATGATTTTGAGATTGAAAAATGTTGAGAAGGGGGAAGTGGTTGTGCAAATTCAGTGGGTTGATGTTGTTGGTTTTAGGGGATTATCGCATATAAAACTTTGA 516 0.3779 MDNNVLGILKLRIIKGINLAIRDTRASDPYVVVRMGDQKLKTRVIKNNCNPTWNEELTLFVKDVNIPLHLTVYDKDTFTVDDKMGEAEVDFIPFLRCKKMELKNLPNGCAVKRIQPNRSNYLAEESSCVWNDGDIVQQMILRLKNVEKGEVVVQIQWVDVVGFRGLSHIKL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00553 171 SMART C2_3c 8 103 IPR000008 -
Viun2g00553 171 Pfam C2 domain 7 91 IPR000008 -
Viun2g00553 171 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Viun2g00553 171 Gene3D C2 domain 2 163 IPR035892 -
Viun2g00553 171 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 161 IPR044562 -
Viun2g00553 171 CDD C2_ArfGAP 6 149 - -
Viun2g00553 171 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 94 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00553 Viun-Chr2 13521215 13526763 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00553 39 168 C2H2 Transcription Factor Family AT1G70790 63.636 8.81e-58 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00553 - - gmx:100792328 263.077