Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00552 ATGGACAATAGTATTCTGGGTCTTCTCAAACTTCGAATTATAAGAGGTACTGATCTTGCAATTCGCGATGCCATTAAAGGACGTGCCAGTGACCCTTATGTGGTCGTCAGCATGGGCGATCAGAAGCTGAAGACTTCAGTTAAAAAAAACAACTGCAATCCTGAGTGGAATCAAGAAAGGACTCTTTCTATAAAGGACGTTACAACCCCAATACATCTGTCTGTTTATGACAAAGACACATTCTCAGGGGATGACAAAATGGGAGATGCAGATATAGACTTAAAACCATATGTTCAGTGTGTACAAATAGGGTTCACTAAGCTCACAAATGGTACTGTAGTGAAGACCATTCAACCAGATGAAACTAATTGCCTTGCTAAAGAAAGTAACTGCATTTGGCAAAATGAAACCATCATCCAAGAAATGGTTTTGAAATTGAGAAATGTTGAGAGTGGGGAATTAGCTGTGGAAATAGAGTGGGTTGATGTTATTGGTTGCAAGGGCTTATCACATCTCGATCTTTAA 525 0.3943 MDNSILGLLKLRIIRGTDLAIRDAIKGRASDPYVVVSMGDQKLKTSVKKNNCNPEWNQERTLSIKDVTTPIHLSVYDKDTFSGDDKMGDADIDLKPYVQCVQIGFTKLTNGTVVKTIQPDETNCLAKESNCIWQNETIIQEMVLKLRNVESGELAVEIEWVDVIGCKGLSHLDL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00552 174 Gene3D C2 domain 5 167 IPR035892 -
Viun2g00552 174 Pfam C2 domain 8 96 IPR000008 -
Viun2g00552 174 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Viun2g00552 174 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 166 IPR044562 -
Viun2g00552 174 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 95 IPR035892 -
Viun2g00552 174 SMART C2_3c 8 106 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00552 Viun-Chr2 13497750 13506407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00552 42 171 C2H2 Transcription Factor Family AT1G70790 57.576 4.23e-52 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00552 - - gmx:100784381 279.641