Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00545 ATGATGTATATCAAAGGTTCCGATGTCGGGAATTCCAGCAAATGTAAACGAGAATATTCTTCATCATTAGTCTCAAACCTTCCTGCGTATGAAGATTTGGAGTTAGGGCATCAATATAATATAAGGAATCAAGTCACTATGCTTTACGACTGGCGTAAGCATTCTGAAATAAGCAACTGCCGTAATAAGATTAGAAATGACGTTTTTGGAATTTTAATATCCATAATGCACTGGGAGCAGAGAAAGTCATCTACAATTGCAAATATTCTGGAAAGCGAGCTATTTATGGATGCTGCTTCACAGGAGGAGTATATGGACAGGAAGACATTGGTTCGGCGGTTGAAGACAAAAGTCAACATGTTTCGTGCAAATAAATGTTGTCAAGTAGACAATGCTGTTTCTCGCACATCGAATATGTTGTCATCTTCTTCTGGCTCATTGCATTCTTGGTCTAATGAAAGTGTGCCCGGACATGCTTTTCAGAGAGTGCTCGGTCCTTGCATTAATGCAACTGATTATGGTGCAGTTGCTGCACATAATAAACATCACTTCCCAAAAGGAGGGCTGTCATCGATCCCGAAATGTACTGATTTGGATGTGCTTTCTGAGTTTCCTGCTGCTTCTGTTGGGGGAAGCAATTTGGAAGCTTCATTTGAAGTACCCAATCGTTTTCTTGGCTCCAGTAGCATTGGAAATCAACAGAACTGCAAAGATTTTGAACCTGGGGTCCTGACCAAAAGAAAAATTGATTGCCCTTCTGAAGTTATGGAACCATTCATCAAAAGAAGAAAAGTGGACTATGAAAGTATAGAATTCAGAGGTTCACAAGCTGATAATATTTTAAATCCAGAGGAACCAACAAAAGACCATGATTTGATAGTCAACGATAAGTTAGTGGATTCTATCACTGGATCTGATTCTAATATGGAAACTGTTTGCCAAAAATCTATGCCTTCAAATACAGAGGACATACAAGGCAAAAGCGGATTGAACCAAGATGAGTCCAATGCTACAGAGAAAGTCATTGAACCAAAATCTCAAGAAAAGGAAATGAAGTCCACAGATCAAACCGCTAATATTGTTCCTTCAACTGAATCTTTAACAAGAAGTCGAATAAAGGAACACATTAGAAGTCTTGGAAAACAAGATAATAATAAGGTTACAACGGACGGAGAATCAGGAAATGATGTTTACAAATGCCAATTATGTTCAATGACAACGCTGTACTTTGCCCCTAAGCCAATTTATTGTCTTTGTTGCGGCATCAGCATCAGGCGTAATGCATGTTATTACTATAAAAGAGAAGAAGAGGACACAAATAATTGCTTTTGTACTACATGCTATAAGAATGCCCGAGGTGGGAACATCTCATTCAACGGGACAACTGTTTCCAAGACAGATCTTAGCAAAAATAAAAATGATGGAGAATGTGAAGAAGCGTGGATCCAATGCAGTAAATGCAAAAGTTGGCAGCATCAGATATGCGCACTCTACAACAGTAAAAGTGATTTGGACAACACTGCTGAATATATATGCCTTTTATGCTGCCTAAACGAAAATAGAAACGATGTGCGTGTACCCTTTGACGCTAAAGACTTGCCTAGAACCAAACTTAGTGACCACATAGAGGGGAGGCTTTTGAAGCGCCTCGGTCAAATTGAAAGGAATAAGATTCCGGAGGTTTTTGTAGCAGACAATCTTTCTGTTAGGGTTGTGCTATCTGTGGACAAACATATTGAAGTGAAGAAACAATTTCTCAATATCTTTGAGGGGAATGATTATCCTGCAGAATTTTCTTACGCTTCAAAAGTTATTCTTCTGTTTCAAAAGATTGATGGAGTGGATGTGTGCCTCTTTGCAATGTATGCTCAAGAGTTTGGCTCAGAATGCGGCTATCCAAATCAGCGTTCTATATACATTTCATATCTCGATTCGGTTAAGTATTTTAGGCCGGAAATACATATCTCGGCCAGAGAATCTCTCCGTACCTTCGTTTACCATGAAATATTGATTGGATATCTTGATTTTTGCAAGAAAAGAGGTTTTACAACTTGTTACATATGGTCCTGTCCGCCTATAAAGGGAGAAGATTATATATTCTACTGTCACCCTGATTCTCAAAAAACTCCAAAGAAAGATCAACTACGACATTGGTATCATTCAGCTCTAAGAAAGGCTGGTGAAGAGGATATTGTTGTTGGTTTATCTAACATATACGATCGTTTCTTTCTTCCTACTGGAAAACGTGAATCCAAGGTAACTGCTTCTCGTTTGCCTTACTTTGACGGGGACTTCTGGTCTGGTGCTGCTATGGATAAAGCCATGCAGATTGAACAACACACTGGAGGAAACCGTGAAAAGATGCTGAAATTAGTACCAATTAGATCTTTGAAGTCCATGGGATGTGTAAATCTTTCAAAAGGAACTGCAAAAGATATCCTAGTGATGCAAAAGCTGGGACAAACCATATCACCTTTCAAGGAAGATTTTATGGTAGTTCAACTTCAGTATGTTTGCATCCACTGCCATAAAGTGATACAGTGTGGGAAGCGATGGTTTTGCAAGGACTGCAAGATATTTCAGGAGTGTGAAAGATGTCACACTGCTGATTCACACACTTCTGTCAAAGGCGAGAGACATAAACTTTGTCAAGTCCTTACGGAACGCATCCTTCCTGATACAACTGAGGAGAAAGATATCATCTTTAATAAAGGGTTATTTGAAACCAGATATAACTTTCTTAGCTTTTGCCAAAAGAATAGGTTTCAATTTGATTCACTCCGTCAAGCGAAGTATTCCTCAATGATGATCCTCCATTTTTTGAGCAACCGTACTCACATGACTGTCGGAATAAGTTGCCAAGTTTGCTGTAAACGCATTGTTAGCCAATCTTACTGGAGATGTGAGACTTGCCCTGAGTTCACTGTCTGCTCTGCATGCTATATCGCCAGAGGTGCCAAATGCCATTCACACACGTTGAGTGAAACTTGTTCAACCGCACAATCTCCTTCAGGAAGTGAAGAATTAAAGCAGAACACAACAGTGGAACTGCTGGAAGTTGTAAAGCACGCATCACAATGTCATTCAACTCAAACTCGACCATGCACCTACCCCTACTGCCTTAAAATCAGAAAGTTGTTTTCTCATGCCAGTAGGTGTACTGTTCGAGTTTCTGGAGGATGCCAACATTGTAAGAAAGTTTGGCAAGCAATAGCTTTACACTCGAAGAATTGTAGAGACTCAGCATGTTGCATACCCCGCTGCATGGATATGAAGAAACAAGCTGGATGGCTTGCGTCGTAG 3303 0.3978 MMYIKGSDVGNSSKCKREYSSSLVSNLPAYEDLELGHQYNIRNQVTMLYDWRKHSEISNCRNKIRNDVFGILISIMHWEQRKSSTIANILESELFMDAASQEEYMDRKTLVRRLKTKVNMFRANKCCQVDNAVSRTSNMLSSSSGSLHSWSNESVPGHAFQRVLGPCINATDYGAVAAHNKHHFPKGGLSSIPKCTDLDVLSEFPAASVGGSNLEASFEVPNRFLGSSSIGNQQNCKDFEPGVLTKRKIDCPSEVMEPFIKRRKVDYESIEFRGSQADNILNPEEPTKDHDLIVNDKLVDSITGSDSNMETVCQKSMPSNTEDIQGKSGLNQDESNATEKVIEPKSQEKEMKSTDQTANIVPSTESLTRSRIKEHIRSLGKQDNNKVTTDGESGNDVYKCQLCSMTTLYFAPKPIYCLCCGISIRRNACYYYKREEEDTNNCFCTTCYKNARGGNISFNGTTVSKTDLSKNKNDGECEEAWIQCSKCKSWQHQICALYNSKSDLDNTAEYICLLCCLNENRNDVRVPFDAKDLPRTKLSDHIEGRLLKRLGQIERNKIPEVFVADNLSVRVVLSVDKHIEVKKQFLNIFEGNDYPAEFSYASKVILLFQKIDGVDVCLFAMYAQEFGSECGYPNQRSIYISYLDSVKYFRPEIHISARESLRTFVYHEILIGYLDFCKKRGFTTCYIWSCPPIKGEDYIFYCHPDSQKTPKKDQLRHWYHSALRKAGEEDIVVGLSNIYDRFFLPTGKRESKVTASRLPYFDGDFWSGAAMDKAMQIEQHTGGNREKMLKLVPIRSLKSMGCVNLSKGTAKDILVMQKLGQTISPFKEDFMVVQLQYVCIHCHKVIQCGKRWFCKDCKIFQECERCHTADSHTSVKGERHKLCQVLTERILPDTTEEKDIIFNKGLFETRYNFLSFCQKNRFQFDSLRQAKYSSMMILHFLSNRTHMTVGISCQVCCKRIVSQSYWRCETCPEFTVCSACYIARGAKCHSHTLSETCSTAQSPSGSEELKQNTTVELLEVVKHASQCHSTQTRPCTYPYCLKIRKLFSHASRCTVRVSGGCQHCKKVWQAIALHSKNCRDSACCIPRCMDMKKQAGWLAS 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00545 1100 Pfam TAZ zinc finger 1017 1088 IPR000197 -
Viun2g00545 1100 SMART KAT11_2 554 846 IPR013178 GO:0004402|GO:0006355|GO:0016573
Viun2g00545 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 467 516 IPR013083 -
Viun2g00545 1100 SUPERFAMILY RING/U-box 931 997 - -
Viun2g00545 1100 MobiDBLite consensus disorder prediction 316 337 - -
Viun2g00545 1100 SMART PHD_3 443 516 IPR001965 -
Viun2g00545 1100 CDD PHD_HAC_like 443 515 - -
Viun2g00545 1100 MobiDBLite consensus disorder prediction 316 359 - -
Viun2g00545 1100 Gene3D TAZ domain 1003 1097 IPR035898 -
Viun2g00545 1100 Pfam Histone acetylation protein 565 767 IPR013178 GO:0004402|GO:0006355|GO:0016573
Viun2g00545 1100 PANTHER CBP/P300-RELATED 316 1094 IPR013178 GO:0004402|GO:0006355|GO:0016573
Viun2g00545 1100 SUPERFAMILY FYVE/PHD zinc finger 478 517 IPR011011 -
Viun2g00545 1100 SUPERFAMILY RING/U-box 814 870 - -
Viun2g00545 1100 MobiDBLite consensus disorder prediction 338 352 - -
Viun2g00545 1100 SUPERFAMILY TAZ domain 1009 1093 IPR035898 -
Viun2g00545 1100 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 527 946 IPR031162 GO:0004402
Viun2g00545 1100 ProSiteProfiles Zinc finger TAZ-type profile. 1002 1091 IPR000197 -
Viun2g00545 1100 SMART TAZ_2 1008 1089 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00545 Viun-Chr2 13170313 13176059 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Viun2g00545 HAT_KAT11 9.5e-29 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00545 K04498 - gmx:102668168 1092.41