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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Viun2g00531
ATGGCTTCCAAGCCCCGCACGGTTGAAGAGATCTTCAGGGATTTTAGAGCCCGAAGAAACGCTATTATTCGCGCACTCACTCACGACGTTGATGAATTTTACGGTCTCTGTGATCCAGGTAAGGATAACTTGTGCCTCTATGGACATCCAAACGGGGCCTGGGAGGTAGCTCTGCCATCTGAGGAAGTTCCACCGGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCCAGGGACGACCTTAGCCGCAAGGACTGGCTTTCTCTGGTTGCTGTGCATAGTGATTCATGGCTGCTTGCTGTGGCCTTTTACCTTGGAACTCGGCTTAACCACAATGAAAGAAAACGCCTATTTGGTTTGATCAATGCTCTTTCCACTGTTTTTCAAGTTGCTACTGGCAATAAACCAATTAAGGAGAAGCTGAGCATGGATAGCGGAAGCAAATGTGATGGAGGCTTGATAAAAGGTGAGCATATTAAAATATTTTGTGGAAGCTGTGGTGGAAAATACAATGGAGATGAACTTTGGATCGGATGTGATATATGTGAGTGGTGGTACCATGGGAGGTGCGTTATGATTAACCCTGCAAAGGCTGACACCCTAAAGCACTATAAATGTCCATCATGCAGCTTGAGAAGGAGCAGGTCATAG
651
0.467
MASKPRTVEEIFRDFRARRNAIIRALTHDVDEFYGLCDPGKDNLCLYGHPNGAWEVALPSEEVPPELPEPALGINFARDDLSRKDWLSLVAVHSDSWLLAVAFYLGTRLNHNERKRLFGLINALSTVFQVATGNKPIKEKLSMDSGSKCDGGLIKGEHIKIFCGSCGGKYNGDELWIGCDICEWWYHGRCVMINPAKADTLKHYKCPSCSLRRSRS
216
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Viun2g00531
216
FunFam
PHD finger alfin-like protein
155
211
-
-
Viun2g00531
216
Pfam
PHD-finger
162
210
IPR019787
-
Viun2g00531
216
PANTHER
CPG BINDING PROTEIN
4
215
IPR045104
GO:0006355|GO:0042393
Viun2g00531
216
CDD
PHD_AL_plant
162
212
IPR044104
-
Viun2g00531
216
ProSitePatterns
Zinc finger PHD-type signature.
163
209
IPR019786
-
Viun2g00531
216
SMART
PHD_3
162
210
IPR001965
-
Viun2g00531
216
Gene3D
Zinc/RING finger domain, C3HC4 (zinc finger)
160
210
IPR013083
-
Viun2g00531
216
ProSiteProfiles
Zinc finger PHD-type profile.
160
212
IPR019787
-
Viun2g00531
216
Pfam
Alfin
7
132
IPR021998
GO:0006355|GO:0042393
Viun2g00531
216
SUPERFAMILY
FYVE/PHD zinc finger
161
213
IPR011011
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Viun2g00531
Viun-Chr2
12702775
12706206
Dispersed/Tandem
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Viun2g00531
2
216
Alfin-like Transcription Factor Family
AT5G05610
61.603
1.48e-91
266
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TR
PHD
Viun2g00531
Alfin
4.9e-62
No_clan
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Viun2g00531
K26274
-
vra:106776977
430.639
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