Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00531 ATGGCTTCCAAGCCCCGCACGGTTGAAGAGATCTTCAGGGATTTTAGAGCCCGAAGAAACGCTATTATTCGCGCACTCACTCACGACGTTGATGAATTTTACGGTCTCTGTGATCCAGGTAAGGATAACTTGTGCCTCTATGGACATCCAAACGGGGCCTGGGAGGTAGCTCTGCCATCTGAGGAAGTTCCACCGGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCCAGGGACGACCTTAGCCGCAAGGACTGGCTTTCTCTGGTTGCTGTGCATAGTGATTCATGGCTGCTTGCTGTGGCCTTTTACCTTGGAACTCGGCTTAACCACAATGAAAGAAAACGCCTATTTGGTTTGATCAATGCTCTTTCCACTGTTTTTCAAGTTGCTACTGGCAATAAACCAATTAAGGAGAAGCTGAGCATGGATAGCGGAAGCAAATGTGATGGAGGCTTGATAAAAGGTGAGCATATTAAAATATTTTGTGGAAGCTGTGGTGGAAAATACAATGGAGATGAACTTTGGATCGGATGTGATATATGTGAGTGGTGGTACCATGGGAGGTGCGTTATGATTAACCCTGCAAAGGCTGACACCCTAAAGCACTATAAATGTCCATCATGCAGCTTGAGAAGGAGCAGGTCATAG 651 0.467 MASKPRTVEEIFRDFRARRNAIIRALTHDVDEFYGLCDPGKDNLCLYGHPNGAWEVALPSEEVPPELPEPALGINFARDDLSRKDWLSLVAVHSDSWLLAVAFYLGTRLNHNERKRLFGLINALSTVFQVATGNKPIKEKLSMDSGSKCDGGLIKGEHIKIFCGSCGGKYNGDELWIGCDICEWWYHGRCVMINPAKADTLKHYKCPSCSLRRSRS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00531 216 FunFam PHD finger alfin-like protein 155 211 - -
Viun2g00531 216 Pfam PHD-finger 162 210 IPR019787 -
Viun2g00531 216 PANTHER CPG BINDING PROTEIN 4 215 IPR045104 GO:0006355|GO:0042393
Viun2g00531 216 CDD PHD_AL_plant 162 212 IPR044104 -
Viun2g00531 216 ProSitePatterns Zinc finger PHD-type signature. 163 209 IPR019786 -
Viun2g00531 216 SMART PHD_3 162 210 IPR001965 -
Viun2g00531 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 210 IPR013083 -
Viun2g00531 216 ProSiteProfiles Zinc finger PHD-type profile. 160 212 IPR019787 -
Viun2g00531 216 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Viun2g00531 216 SUPERFAMILY FYVE/PHD zinc finger 161 213 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00531 Viun-Chr2 12702775 12706206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00531 2 216 Alfin-like Transcription Factor Family AT5G05610 61.603 1.48e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun2g00531 Alfin 4.9e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00531 K26274 - vra:106776977 430.639