Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00530 ATGGCTTCCAAGCCCCGCACGGTTGAAGAGATCTTCAGGGATTTTAGAGCCCGAAGAAACGCTATTATTCGCGCACTCACTCACGACGTTGATGAATTTTACGGTCTCTGTGATCCAGGTAAGGATAACTTGTGCCTCTATGGACATCCAAACGGGGCCTGGGAGGTAGCTCTGCCATCTGAGGAAGTTCCACCGGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCCAGGGACGACCTTAGCCGCAAGGACTGGCTTTCTCTGGTTGCTGTGCATAGTGATTCATGGCTGCTTGCTGTGGCCTTTTACCTTGGAACTCGGCTTAACCACAATGAAAGAAAACGCCTATTTGGTTTGATCAATGCTCTTTCCACTGTTTTTCAAGTTGCTACTGGCAATAAACCAATTAAGGAGAAGCTGAGCATGGATAGCGGAAGCAAATGTGATGTAAGCATCGATGGAGGCTTGATAAAAGGTGAGCATATTAAAATATTTTGTGGAAGCTGTGGTGGAAAATACAATGGAGATGAACTTTGGATCGGATGTGATATATGTGAGTGGTGGTACCATGGGAGGTGCGTTATGATTAACCCTGCAAAGGCTGACACCCTAAAGCACTATAAATGTCCATCATGCAGCTTGAGAAGGAGCAGGTCATAG 663 0.4661 MASKPRTVEEIFRDFRARRNAIIRALTHDVDEFYGLCDPGKDNLCLYGHPNGAWEVALPSEEVPPELPEPALGINFARDDLSRKDWLSLVAVHSDSWLLAVAFYLGTRLNHNERKRLFGLINALSTVFQVATGNKPIKEKLSMDSGSKCDVSIDGGLIKGEHIKIFCGSCGGKYNGDELWIGCDICEWWYHGRCVMINPAKADTLKHYKCPSCSLRRSRS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00530 220 PANTHER CPG BINDING PROTEIN 4 219 IPR045104 GO:0006355|GO:0042393
Viun2g00530 220 SUPERFAMILY FYVE/PHD zinc finger 165 217 IPR011011 -
Viun2g00530 220 ProSiteProfiles Zinc finger PHD-type profile. 164 216 IPR019787 -
Viun2g00530 220 ProSitePatterns Zinc finger PHD-type signature. 167 213 IPR019786 -
Viun2g00530 220 FunFam PHD finger alfin-like protein 159 215 - -
Viun2g00530 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 214 IPR013083 -
Viun2g00530 220 Pfam PHD-finger 166 214 IPR019787 -
Viun2g00530 220 CDD PHD_AL_plant 166 216 IPR044104 -
Viun2g00530 220 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Viun2g00530 220 SMART PHD_3 166 214 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00530 Viun-Chr2 12702773 12706206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00530 2 220 Alfin-like Transcription Factor Family AT5G05610 62.025 1.50e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun2g00530 Alfin 5.2e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00530 K26274 - vra:106776977 443.351