Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00529 ATGGCTTCCAAGCCCCGCACGGTTGAAGAGATCTTCAGGGATTTTAGAGCCCGAAGAAACGCTATTATTCGCGCACTCACTCACGGTAAGGATAACTTGTGCCTCTATGGACATCCAAACGGGGCCTGGGAGGTAGCTCTGCCATCTGAGGAAGTTCCACCGGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCCAGGGACGACCTTAGCCGCAAGGACTGGCTTTCTCTGGTTGCTGTGCATAGTGATTCATGGCTGCTTGCTGTGGCCTTTTACCTTGGAACTCGGCTTAACCACAATGAAAGAAAACGCCTATTTGGTTTGATCAATGCTCTTTCCACTGTTTTTCAAGTTGCTACTGGCAATAAACCAATTAAGGAGAAGCTGAGCATGGATAGCGGAAGCAAATGTGATGTAAGCATCGATGGAGGCTTGATAAAAGGTGAGCATATTAAAATATTTTGTGGAAGCTGTGGTGGAAAATACAATGGAGATGAACTTTGGATCGGATGTGATATATGTGAGTGGTGGTACCATGGGAGGTGCGTTATGATTAACCCTGCAAAGGCTGACACCCTAAAGCACTATAAATGTCCATCATGCAGCTTGAGAAGGAGCAGGTCATAG 630 0.4683 MASKPRTVEEIFRDFRARRNAIIRALTHGKDNLCLYGHPNGAWEVALPSEEVPPELPEPALGINFARDDLSRKDWLSLVAVHSDSWLLAVAFYLGTRLNHNERKRLFGLINALSTVFQVATGNKPIKEKLSMDSGSKCDVSIDGGLIKGEHIKIFCGSCGGKYNGDELWIGCDICEWWYHGRCVMINPAKADTLKHYKCPSCSLRRSRS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00529 209 SUPERFAMILY FYVE/PHD zinc finger 154 206 IPR011011 -
Viun2g00529 209 ProSitePatterns Zinc finger PHD-type signature. 156 202 IPR019786 -
Viun2g00529 209 ProSiteProfiles Zinc finger PHD-type profile. 153 205 IPR019787 -
Viun2g00529 209 PANTHER CPG BINDING PROTEIN 4 208 IPR045104 GO:0006355|GO:0042393
Viun2g00529 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 203 IPR013083 -
Viun2g00529 209 SMART PHD_3 155 203 IPR001965 -
Viun2g00529 209 FunFam PHD finger alfin-like protein 148 204 - -
Viun2g00529 209 CDD PHD_AL_plant 155 205 IPR044104 -
Viun2g00529 209 Pfam PHD-finger 155 203 IPR019787 -
Viun2g00529 209 Pfam Alfin 7 121 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00529 Viun-Chr2 12702773 12706206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00529 2 209 Alfin-like Transcription Factor Family AT5G05610 58.650 6.70e-80 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun2g00529 Alfin 1.7e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00529 K26274 - vra:106776977 409.453