Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00528 ATGCATGTGAGTTTCATCATTCTTGCTAAAATCAGAATCTTGCAGAAACTTCCAAAAAATTTCACTACAAAATATGGAGATGGAATTTCAGATCCGGTGTTTCTCAACCTTCCAGATAACACTGAATGGAAAATATACTGGACTAAGCATGAAGGTGAGATTTGGTTTCGGGAGGGATGGAAGGAATTTGCAACACGCTATTTTCTAGATCATGGTGACTTGGTGTTGTTTAAATATGTGGGAATTTCTCGTTTTGATGTCCACATATTTGACAAAAGTGCCGTCGAAATAGACTATCGTTCCCACTTCACTCATGACAATCCTGTTGATTCTGTTGAAACTTTGGATGAACAATGTGATGATGGAACGGACAACATTGTGTATAATAGTGATGATTCTGAGGAAAATTTGGATGAGCAATGTATCCGAAGCCCCAATGGGGTAAACTTGCATCAGGATGATCAAAGTAGGAGTGCTGGTTTTCAAAAGCCAAAATTTACGAAGCAGAAGTTAGATGGAGAAAAGGGAAAAAGCATCTTTGATGATGAATGCCCAAAAGTGGAGCAATCAACTTCCTTGGTTTTAAACAGAGCGACGACTTCTAAATCAATGCATCCTTCTTTCAAGCTTGTTGTGTTGCCATCCTTTATCATTTCTGATTCCCTGGTTATTCCATCAGAATTTTCAGAACAATATTTGAAGAAGACACGTGCAGTTGTCCTCCTTGAGGTCACGGATGGGAGAAGTTGGCCTGTAATTTTTTCTGCTCCTAGAATTATTGCTGGATGGAAGAAATTTGCATCAGAAAATAATTTGAGAGTGGATGATGTCTGTGTGTTTGAGCTGATAACGAAGATCCAGAGTCTGGCCTTCAAAGTTTCCATTATCCCATATGCAGGAAAACCAACCACACCCATTTCACATGGCACGCTTTCTGCTGGGTGGCCCATGTTTTCAAGAGCAAATAAACTGCGAGCAGGAGATGTTTGTATCTTTGAGTTGGTCAACAGAGAAGATATAACACTTGATGTTCATGTTTTTAGAGATCATATTGAGGATAATAGCAGAACAGATATAGATGGATGGAGTGATTATTGA 1098 0.3907 MHVSFIILAKIRILQKLPKNFTTKYGDGISDPVFLNLPDNTEWKIYWTKHEGEIWFREGWKEFATRYFLDHGDLVLFKYVGISRFDVHIFDKSAVEIDYRSHFTHDNPVDSVETLDEQCDDGTDNIVYNSDDSEENLDEQCIRSPNGVNLHQDDQSRSAGFQKPKFTKQKLDGEKGKSIFDDECPKVEQSTSLVLNRATTSKSMHPSFKLVVLPSFIISDSLVIPSEFSEQYLKKTRAVVLLEVTDGRSWPVIFSAPRIIAGWKKFASENNLRVDDVCVFELITKIQSLAFKVSIIPYAGKPTTPISHGTLSAGWPMFSRANKLRAGDVCIFELVNREDITLDVHVFRDHIEDNSRTDIDGWSDY 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00528 365 PANTHER B3 DOMAIN-CONTAINING 309 346 - -
Viun2g00528 365 MobiDBLite consensus disorder prediction 146 172 - -
Viun2g00528 365 ProSiteProfiles B3 DNA-binding domain profile. 207 299 IPR003340 GO:0003677
Viun2g00528 365 SUPERFAMILY DNA-binding pseudobarrel domain 16 100 IPR015300 -
Viun2g00528 365 Gene3D - 6 94 IPR015300 -
Viun2g00528 365 MobiDBLite consensus disorder prediction 146 163 - -
Viun2g00528 365 CDD B3_DNA 17 91 IPR003340 GO:0003677
Viun2g00528 365 Gene3D - 187 299 IPR015300 -
Viun2g00528 365 Gene3D - 302 350 IPR015300 -
Viun2g00528 365 ProSiteProfiles B3 DNA-binding domain profile. 1 93 IPR003340 GO:0003677
Viun2g00528 365 SMART B3_2 5 93 IPR003340 GO:0003677
Viun2g00528 365 SMART B3_2 208 299 IPR003340 GO:0003677
Viun2g00528 365 Pfam B3 DNA binding domain 16 92 IPR003340 GO:0003677
Viun2g00528 365 Pfam B3 DNA binding domain 211 295 IPR003340 GO:0003677
Viun2g00528 365 SUPERFAMILY DNA-binding pseudobarrel domain 310 348 IPR015300 -
Viun2g00528 365 SUPERFAMILY DNA-binding pseudobarrel domain 202 296 IPR015300 -
Viun2g00528 365 CDD B3_DNA 206 297 IPR003340 GO:0003677
Viun2g00528 365 ProSiteProfiles B3 DNA-binding domain profile. 311 350 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00528 Viun-Chr2 12613812 12616168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00528 16 294 B3 DNA Binding Superfamily AT3G18990 26.646 4.30e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun2g00528 B3 5.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00528 - - vun:114174485 751.125