Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00526 ATGGAGAAAGATCACAACTATTCGGCACCGATATCCATGCCTCCAAGCTTCAACACACTTGACTACTCTCTAGATCACGACCAACACCACCTTTATCCACCAAATCAGCATCAACACCAGCTCATGAAGTTCCAAGCTTCTGGTGATGAAAACAACAGTGGATCAATGGTGGATTACATGCCTCAAACACCACCACCACCACCACCACACGGTTTTTACGGTGGTTCCAGCACCGGCACAATATCCTATGATAAATTGAGTTTTGCAGACGTGATGCAGTTTGCGGATTTTGGACCTAAGTTGGCTTTGAATCAAACAAAAAGCTGTGACGAATCTGGGTTAGATCCGGTTTACTTTCTCAAGTTTCCAGTGTTAAACGACAAGATGGAGGAAGAGCAGAACCTGATGGTGAATGAGGACCCTGATGGTGAAGCGGAAAATCACGATGAGAGGTTCAACTTGGTGGATATGGAGGAGAAGTCGAGGGTTGGTGAAGAGGGAATGATGATGAGAGAAGATGAAGAGACTCGGCTTTCTGATGACAACAATTCCGTGCAGATTCGGTTTCTGGGTCAGGAAGAGACTCAGAAGAGTGCAGGAGTGCAGGAAAACAAGAACAAGAGGAAGAGACCAAGAACTGTGAAGACAAGTGAAGAAGTTGAGAGCCAACGCATGACCCACATAGCAGTAGAAAGGAATCGTAGGAAGCAAATGAATGAGCATCTTCGTGTGCTTAGATCACTCATGCCCGGTTCATATGTTCAAAGGGGTGATCAAGCTTCTATAATTGGGGGAGCCATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAGTGTTTGGAGTCACAAAAGAGGAGGAGGCTACTGGGAGAAGCTCAAGCAAGACAAGTTGGGGAACCCTCGATTGGACAGCAACAACCTCCTTTTTTTCCACCTTTGACAATTCCGAACGAACAGATGAAGCTGGTGGAGTTGGAGAGTGGACTTCGTGAAGAAACAGCAGAGAGCAAGTCATGTTTGGCTGATGTTGAAGTGAAGCTTCTAGGATTTGATGCCATGATCAAAATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAAACCATTGCTGCACTTGAAGATCTGCAACTAATAATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCCAGTTCGGTGCAGCAGATATTCAATTTTATCCATGCAAACACTACCATGTGA 1284 0.4509 MEKDHNYSAPISMPPSFNTLDYSLDHDQHHLYPPNQHQHQLMKFQASGDENNSGSMVDYMPQTPPPPPPHGFYGGSSTGTISYDKLSFADVMQFADFGPKLALNQTKSCDESGLDPVYFLKFPVLNDKMEEEQNLMVNEDPDGEAENHDERFNLVDMEEKSRVGEEGMMMREDEETRLSDDNNSVQIRFLGQEETQKSAGVQENKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQARQVGEPSIGQQQPPFFPPLTIPNEQMKLVELESGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFNFIHANTTM 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00526 427 Gene3D - 213 288 IPR036638 GO:0046983
Viun2g00526 427 MobiDBLite consensus disorder prediction 191 224 - -
Viun2g00526 427 Pfam Helix-loop-helix DNA-binding domain 223 274 IPR011598 GO:0046983
Viun2g00526 427 SMART finulus 228 279 IPR011598 GO:0046983
Viun2g00526 427 MobiDBLite consensus disorder prediction 47 68 - -
Viun2g00526 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 289 IPR036638 GO:0046983
Viun2g00526 427 CDD bHLH_AtFAMA_like 225 292 - -
Viun2g00526 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 222 273 IPR011598 GO:0046983
Viun2g00526 427 MobiDBLite consensus disorder prediction 200 224 - -
Viun2g00526 427 PANTHER TRANSCRIPTION FACTOR FAMA 145 418 IPR044283 GO:0003700|GO:0010052
Viun2g00526 427 FunFam Basic helix-loop-helix transcription factor 213 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00526 Viun-Chr2 12578020 12581141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00526 46 427 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 60.922 2.22e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun2g00526 HLH 9.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00526 K26213 - gmx:100813515 677.552