Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00525 ATGGGTTCCGATGATATCTCTCATTTACAGCAAATCCTTGAGGAAAGGATGAGAGAAGCCAATAGAAATAGTAATGCAGAAAAATTCATTCGCTGCATTGAGATGGTGCAGAAGAGAAGTATTATGTACTATCAGCAATCAGATTCTCAGTCCTTTCTAAAAATTGTAGTTGCACTCCCAACCATGGTTGCCAGTTGTCGTGGTATTCTTGACAGGGGTATTCAACTTGATGGTCTAGGAATGAAAACATTCTTGACTTATGAAAGCAGTGTACCTTTTTCCCTACGGTTTATGATTGATTGCAAAATTGTTGGTGGAAATTGGATTGAAATTCCAGTGGGAAAATATAAGAAGATAGTGGAAAGCATGTCTTATTGCCAGTTGGAGTTTGATTGTCTGCATTCTGATTTGATTAGTCATGCTCCAGAAGGGGAATATTCAAAGATGGCGCCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCCGTGCCTAGTCATGATCCTGTTATCCAGATTGCCAATTTGGTTACTTTACAAGGAGAAGACCATCCGCTTATTCGCAATGTGATGACCCTTAAATCATGTTCTCCTATTGCTGGTGTTGATGTGATGTCATTTGATACGGAAACAGAAGTCCTACTAGCCTGGAGGGATTTCATTCGGGAAGTGGACCCTGATATTGTTATTGGATATAACATCTGCAAATTTGACCTGCCATATCTTATTGAGAGAGCCGCAAAGCTGAAGATAGAAGAATTTCCAATTCTTGGCCGTATTAGGAGCGGTAGAGTTCGGGTAAAGGATTCAACTTTCTCATCGAGGCAGTTGGGGACTAGGGAAAGTAAAGACGTTACAATAGAAGGGAGAGTTCAGTTTGACTTATTCCAGGTTATGCAAAGAGACTACAAATTAAGTTCTTATTCACTAAATTCTGTCTCAGCACACTTCCTTTCTGAGCAGAAAGAGGATGTCCATCATTCTATTATATCTGATCTCCATTATGGAACCGCAGAAACTAGGAGGCGCCTTGCTGTGTATTGTTTGAAGGATGCATATCTCCCTCAGCGGCTTTTGGATAAATTGATGTTCATTTACAACTATGTGGAGATGGCTCGAGTAACAGGGGTTCCAATTTCTTTTCTACTTTCCAGAGGCCAAAGCATTAAGGTACTTTCTCAACTTCTTAGGAAGGCGAGACAGAAGAATCTTGTCATTCCTAATGTCAAACTGGTTGGGTCTGAACAAGGAACATTTGAAGGTGCCACTGTGTTGGAGGCAAGGGCCGGATATTATGAAAAACCAATCGCTACGTTAGATTTTGCATCCCTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGGTGACTCCTGAAGATGCTCGTAAGCTCAACATCCCTCCAGAGTTTGTGAACAGAACTCCATCCGGTGAAACATTTGTTAAATCAAATCTGCAGAAGGGAATACTTCCTGAAATTCTTGAAGAGCTACTAACAGCCCGTAAAAGGGCAAAAGCAGACTTAAAGGAGGCAAAGGATCCTCTGGAGAGGGCAGTGCTAGATGGTAGGCAGCTGGCCCTGAAAGTTAGTGCAAATTCCGTGTATGGGTTTACTGGGGCTACCATTGGTCAGTTACCATGTTTAGAGATATCATCGAGTGTAACAAGCTATGGTCGACAAATGATTGAGCACACGAAAAAACTTGTGGAAGATAAATTTACTACACTTAATGGCTATGAACACAATGCTGAGGTAATATATGGAGACACGGATTCAGTCATGGTAAGATTTGGTGTTTCTGACGTAGACCAGGCTATGAACTTGGGGAGAGAAGCTGCCGAATTTATAAGTGGAACTTTCACAAAGCCCATCAAACTAGAATTTGAGAAGGTTTATTATCCATATCTCTTAATTAGCAAGAAGAGATATGCTGGTTTGTTGTGGACAAAACCAAACGACTTCGACAAAATGGACACTAAAGGAATTGAAACAGTTCGAAGAGACAACTGTTTGCTGGTCAAAAACCTGGTGAATGATTGTCTTCACAAAATACTGATTGACAGAGACATTCCAGGGGCTGTCCAGTATGTCAAGAATGCAATTTCAGATCTTTACAAGAATCGGATGGATTTATCACAGCTGGTTATTACAAAAGGTTTAACGAAGTCAGGAGATGACTATAAAGTAAAGGCAGCTCACGTTGAACTTGCTGAAAAGATGCGCAAGCGAGATGCTGCCACTGCTCCTAATGTTGGAGACAGAGTACCATATGTAATTATCAAAGGTGCAAGAGGTGCGAAGCCGATTCTGAGAATTTTTGAGCCAATCTTGAAGAATGCTAGGAGCGAACTTCTCCATGGAAGTCATACAGAATCGATTTTTATTTCTTCTAGTACTCCATCAAACCGTGGCCAATCGAAATTACCTTTTCCTAAAATGCTTAAATGCATTGGCTGTAAAACTGTATTAGGCAAGGATCATCATACGGTCTGTTCAGATTGCACAGAAAGGAAGGCTGAGCTATACTGTAAAACAGTGTCTCAAGTGTCTGAGCTGGAGAAGCTTTTTGGGAGGTTGTGGACTCAGTGTCAGGAGTGCCAAGGTTCACCTTATGAAGATGTTCTCTGCACAAGTCGGGATTGTCCAATTTTTTATCGACGAAAAAAGGCACAGAAAGATTTGTGCAAAGCAAGCTCAGAATTGGACAGAATCAGTCCGGATACTCCAAGGAGTAGGAAGAGTTTGTTTGGATTCAAGGGTGAACTGGTTGGGATGGTAAGTTTCATATGA 2820 0.4103 MGSDDISHLQQILEERMREANRNSNAEKFIRCIEMVQKRSIMYYQQSDSQSFLKIVVALPTMVASCRGILDRGIQLDGLGMKTFLTYESSVPFSLRFMIDCKIVGGNWIEIPVGKYKKIVESMSYCQLEFDCLHSDLISHAPEGEYSKMAPFRILSFDIECAGRKGHFPVPSHDPVIQIANLVTLQGEDHPLIRNVMTLKSCSPIAGVDVMSFDTETEVLLAWRDFIREVDPDIVIGYNICKFDLPYLIERAAKLKIEEFPILGRIRSGRVRVKDSTFSSRQLGTRESKDVTIEGRVQFDLFQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLHYGTAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKARQKNLVIPNVKLVGSEQGTFEGATVLEARAGYYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNIPPEFVNRTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPLERAVLDGRQLALKVSANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVRFGVSDVDQAMNLGREAAEFISGTFTKPIKLEFEKVYYPYLLISKKRYAGLLWTKPNDFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLYKNRMDLSQLVITKGLTKSGDDYKVKAAHVELAEKMRKRDAATAPNVGDRVPYVIIKGARGAKPILRIFEPILKNARSELLHGSHTESIFISSSTPSNRGQSKLPFPKMLKCIGCKTVLGKDHHTVCSDCTERKAELYCKTVSQVSELEKLFGRLWTQCQECQGSPYEDVLCTSRDCPIFYRRKKAQKDLCKASSELDRISPDTPRSRKSLFGFKGELVGMVSFI 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00525 939 Pfam C4-type zinc-finger of DNA polymerase delta 826 897 IPR025687 -
Viun2g00525 939 CDD DNA_polB_delta_exo 146 375 - -
Viun2g00525 939 Pfam DNA polymerase family B 383 776 IPR006134 GO:0000166|GO:0003677
Viun2g00525 939 SUPERFAMILY Ribonuclease H-like 29 406 IPR012337 -
Viun2g00525 939 FunFam DNA polymerase 190 423 - -
Viun2g00525 939 NCBIfam DNA polymerase (pol2) 404 774 - -
Viun2g00525 939 Gene3D DNA Polymerase, chain B, domain 1 3 121 - -
Viun2g00525 939 Gene3D Helix hairpin bin 498 550 - -
Viun2g00525 939 SUPERFAMILY DNA/RNA polymerases 408 785 IPR043502 -
Viun2g00525 939 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 3 864 - -
Viun2g00525 939 Gene3D - 671 786 IPR042087 -
Viun2g00525 939 PRINTS DNA-directed DNA-polymerase family B signature 534 546 IPR006172 GO:0000166|GO:0003676|GO:0003887
Viun2g00525 939 PRINTS DNA-directed DNA-polymerase family B signature 595 603 IPR006172 GO:0000166|GO:0003676|GO:0003887
Viun2g00525 939 PRINTS DNA-directed DNA-polymerase family B signature 442 455 IPR006172 GO:0000166|GO:0003676|GO:0003887
Viun2g00525 939 ProSitePatterns DNA polymerase family B signature. 597 605 IPR017964 GO:0000166|GO:0003676
Viun2g00525 939 Gene3D Palm domain of DNA polymerase 425 654 IPR023211 -
Viun2g00525 939 SMART polmehr3 150 609 IPR006172 GO:0000166|GO:0003676|GO:0003887
Viun2g00525 939 FunFam DNA polymerase 498 550 - -
Viun2g00525 939 Pfam DNA polymerase family B, exonuclease domain 14 319 IPR006133 -
Viun2g00525 939 Gene3D - 151 369 IPR036397 GO:0003676
Viun2g00525 939 CDD POLBc_delta 424 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00525 Viun-Chr2 12537110 12547832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00525 1 915 Core DNA Replication Machinery Family AT5G63960 76.611 0.0 1515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00525 K02327 - gmx:100817379 1588.16