LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun2g00496	ATGGAAAGAATAGGGGATGTAGCTCTCTTTTGTTTAGCTTTGTTCTTCCTGTCGACTTCAGTGGCTGGTTTGCTTTCTCCCAAAGGTGTCAACTATGAAGTTCAAGCTCTGATGAGCATTAAGAACTCTCTGATGGATCCTCATTCTGTCTTGAGTAACTGGGATGCGGATGCTGTAGATCCTTGCAACTGGGCTATGGTCACATGTTCCTCTGATCATTTTGTCACTGCCCTTGGGATTCCAAGCCAAAATATATCTGGCCGCCTCTCACCAAGCATAGGCAGTTTAACAAACCTCCTCACTGTGCTTCTTCAGGACAATAATATTACAGGACCAATCCCCTCAGAGATTGGTAGGCTCCAAAAGCTTCAAACTCTTGATCTTTCGGACAATTTCTTCACTGGTCAACTTCCAGATTCCCTTTCCCATATGAAGGGTCTCCATTACTTGCGGCTTAACAATAACAGTTTGACTGGACCAATTCCTTCCTCTTTGGCTAACATGACTCAACTTGCCTTTCTGGATATCTCTTATAATAACTTGAGTGGACCTGTACCAAGAATAAATGCAAAAACATTCAACATCGTAGGCAATCCGCAGATATGTGCCACTGGAGTCGAGCAGAACTGCTTCAGGACAACGTCAATTCCTTTGGCTCCAAATAATTCTCAAGATTCACAATCCACCAAAAGACCAAAGAGTCACAAAGCAGCCTTGGCGTTTACTTCAAGCTTAAGCTGCATATGCTTACTAATTCTGGGACTTGGCTTCCTCATATGGTGGAGACAAAGACATAACAAGCAAATATTCTTTGATGTTAATGAACAACACCGTGAAGAGGTTTTCCTTGGAAACCTCAAGAAGTTCCACTTGAGAGAACTTCAGCTTGCTACAAACAACTTCAGCAGCAAGAACATGATCGGCAAAGGTGGTTTCGGAAATGTGTACAAAGGGTATCTTCAGGATGGAACAGTTATAGCAGTAAAAAGGCTGAAAGATGGTAACGCTATTGGAGGTGAGATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCCGTCCATCGGAATCTTCTTCGGCTATATGGTTTCTGCATGACAACTACAGAGAGGCTCTTGGTTTATCCGTACATGTCAAATGGAAGTGTCGCTTCTCGTCTGAAAGCCAAGCCAGCATTGGACTGGCCTACGAGGAAGAGAATAGCATTAGGAGCTGGAAGAGGCTTGTTATATTTGCATGAACAGTGTGATCCAAAAATTATTCACAGGGATGTAAAGGCAGCAAATATCTTGCTTGATGATTATTGTGAAGCTGTAGTGGGAGATTTTGGGCTGGCAAAGCTGTTAGATCACAGGGATTCACATGTGACAACAGCAGTGAGAGGCACTGTGGGGCACATAGCCCCTGAGTATCTCTCAACAGGTCAATCTTCTGAGAAGACAGATGTGTTTGGGTTTGGAATTCTTCTTCTTGAACTAATATCTGGCCAAAGAGCGCTTGAGTTTGGGAAAGCAGTAAACCAGAAAGGAGCCATGCTAGACTGGGTGAAGAAAATCCATCAAGAGAAGAAAATTGACTTGTTGGTTGACAAGGACCTGAAAAATAACTATGATAGGATTGAGCTTGATGAAATTGTGCAAGTGGCTCTTTTATGTACTCAGTACCTTCCAAGTCACAGACCCAAGATGTCCGAAGTGGTTAGGATGCTTGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCCTCACAGAGAGCTGAATCCACAAGAAGCAGAGGAAATGAACTCTCCTCTTCAGAGCGGTACTCTGATCTCACTGATGATTCTTCATTACTTGCACAAGCAATGGAACTTTCTGGCCCAAGATGA	1866	0.4346	MERIGDVALFCLALFFLSTSVAGLLSPKGVNYEVQALMSIKNSLMDPHSVLSNWDADAVDPCNWAMVTCSSDHFVTALGIPSQNISGRLSPSIGSLTNLLTVLLQDNNITGPIPSEIGRLQKLQTLDLSDNFFTGQLPDSLSHMKGLHYLRLNNNSLTGPIPSSLANMTQLAFLDISYNNLSGPVPRINAKTFNIVGNPQICATGVEQNCFRTTSIPLAPNNSQDSQSTKRPKSHKAALAFTSSLSCICLLILGLGFLIWWRQRHNKQIFFDVNEQHREEVFLGNLKKFHLRELQLATNNFSSKNMIGKGGFGNVYKGYLQDGTVIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWPTRKRIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAVNQKGAMLDWVKKIHQEKKIDLLVDKDLKNNYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR	621

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun2g00496	621	SUPERFAMILY	Protein kinase-like (PK-like)	279	571	IPR011009	-
	Viun2g00496	621	Pfam	Leucine rich repeat	122	181	IPR001611	GO:0005515
	Viun2g00496	621	SMART	serkin_6	301	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g00496	621	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	30	212	-	-
	Viun2g00496	621	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	420	432	IPR008271	GO:0004672\|GO:0006468
	Viun2g00496	621	ProSitePatterns	Protein kinases ATP-binding region signature.	307	329	IPR017441	GO:0005524
	Viun2g00496	621	MobiDBLite	consensus disorder prediction	588	612	-	-
	Viun2g00496	621	SUPERFAMILY	L domain-like	32	304	-	-
	Viun2g00496	621	ProSiteProfiles	Protein kinase domain profile.	301	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g00496	621	Pfam	Leucine rich repeat N-terminal domain	31	70	IPR013210	-
	Viun2g00496	621	Gene3D	Phosphorylase Kinase; domain 1	270	377	-	-
	Viun2g00496	621	FunFam	Somatic embryogenesis receptor-like kinase 1	378	590	-	-
	Viun2g00496	621	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	13	581	-	-
	Viun2g00496	621	FunFam	Somatic embryogenesis receptor kinase 1	270	377	-	-
	Viun2g00496	621	MobiDBLite	consensus disorder prediction	578	621	-	-
	Viun2g00496	621	Gene3D	Ribonuclease Inhibitor	30	212	IPR032675	-
	Viun2g00496	621	Pfam	Protein kinase domain	302	568	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g00496	621	Gene3D	Transferase(Phosphotransferase) domain 1	378	590	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun2g00496	Viun-Chr2	11474663	11478637	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun2g00496	8	621	Receptor kinase-like Gene Family	AT5G16000	74.080	0.0	947

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Viun2g00496		Pkinase	9.8e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun2g00496	-		-	gmx:100790194	1157.51