Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00426 ATGTCGGCAGCGTCACCGTCTCCGGCGGCATCCACGCTTTCTCCACCGCCACAAACACCACCCTCCTCCACTAGTCCCTCACCATCCAACGACACCACTCCTCCGCCGCAACAACCTCCTTCTTCCACTTCTCCTCCGCAGCGAACCCCTTCTTCCACTTCTCCGCCACAACCAGCAGAATCTCCGCCTCCGCTAACCCCATCTCCGGCGTCTCCGCCGCCGTCACCGCCACCTAGTTCTTCACCTCCCCCCGTGTCTGGAATAACCCCTCCACCAGTACCTCCGCCGTCACCACCACCATCTTCGCCGCAGCCATCTCCTCCTCCTCCGCCTTCTCCGGATGCACCGGCACCGGTGCCACCGAGCTCTCCACCGCCACCACCACCATCAGCACCAGTTCCATCAAGAAGCCCTCCGCCACCGCCACCATCATCGAACCCTCCTAATAGCACATCTCCACCACCACCACCACAACCATCACCATCAGCTCCACCGCCGCCGCGAAATTCGCCACCACCGCCGGCCACCACGTTGCCACCAGCCTCGCCACCACTAAATTCACCATCTCCTCCGGCTGCACCGCCCCCAAGAAACTCAACAAGGTCACCGCCGCCACCTCCGCCACCTGTGCATTCGCCGTCACCGGGGTCATCGCCGCCGCCAGCACCTGAACCATCCAACCCACCTTCTAGGATTAGTCCTCCTCCCACACCAAGTTCCTCACCAGCTCCCCCTTCAAATTCTACGCCAAGCTCATCACCTCCACCACCTGCAGTTACTCAATTATCCCCGCCATCGCCATCCCCCTCGAAAGTTTCATCGCCCCCATCCCCTACTCCGAACCCCACAGCCTCTGGAGGTGGAATCAGCACTGCTGGTGTAGTGGCTATTACTGTGGCGGCTGGATTTCTGCTTCTTGGCTTCATCGGTGTTCTTATATGGTGCATGAGAAGGCAAAAGAGAAAGATTCCTGTGAATGGTGGTTATGTCATGCCATCCACTCTTGCCTCCTCTCCTGAATCAGATTCATCGTTTTTTAAAACACATTCCTCAGCTCCTCTTGTGCAAAGTGGCTCTGGCAGTGATGTTGTGTACACGCCATCTGATCCTGGTGGACTAGGCCACTCAAGGTCATGGTTTTCATATGAAGAACTGATTAAGGCCACAAATGGTTTCTCAAGTCAAAATCTTTTGGGTGAGGGAGGATTTGGTTGTGTGTATAAAGGGCACCTTCCTGATGGAAGGGAGATAGCAGTGAAACAACTCAAGATTGGTGGAGGCCAGGGAGAGAGAGAATTCAAAGCTGAAGTGGAAATTATCAGTCGTATACATCACCGCCATTTGGTTTCTTTAGTTGGATACTGCATTGAAGACAACAGAAGACTACTTGTCTATGACTACGTTCCTAACAATACCCTTTACTTCCATCTACATGGGGAAAACCAGCCTGTGCTAGAATGGGCAAACCGTGTTAAAATTGCAGCTGGCGCAGCCCGAGGACTAACTTATCTCCATGAAGATTGCAATCCTCGGATCATTCACAGGGATATCAAGTCGTCAAACATTCTTTTAGATTTCAATTATGAAGCTAAGGTCTCAGATTTTGGGCTTGCCAAATTAGCTCTTGATGCAAATACACATATTACCACGCGTGTCATGGGAACTTTTGGGTATGTTGCCCCTGAATATGCTTCAAGTGGTAAATTGACTGAGAAGTCTGATGTATATTCTTTTGGAGTCGTGCTTTTGGAGCTAATTACCGGCCGGAAGCCGGTAGATGTATCCCAACCTCTGGGAGATGAAAGCCTGGTTGAATGGGCTCGTCCTTTACTGAGTCATGCAATCGATACTGAGGAATTCAGTAGTTTGGCAGATCCAAGGCTAGAAAAGAATTACATCGAGAGTGAATTGTATTGCATGATTGAGGTTGCCGCAGCTTGTGTGCGGCATTCAGCTTCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGGAGGTTCTGATCTAACAAATGGAATGCAACTTGGAGAAAGTGAGGTGTTTGACTCTGCACAACAATCTGAAGAAATAAGATTATTTCGGAGAATGGCATTTGGTAGTCAAAATTATAGCACAGATTTCTTTAGCCGTGCTAGTCTGAATCCATGA 2160 0.5102 MSAASPSPAASTLSPPPQTPPSSTSPSPSNDTTPPPQQPPSSTSPPQRTPSSTSPPQPAESPPPLTPSPASPPPSPPPSSSPPPVSGITPPPVPPPSPPPSSPQPSPPPPPSPDAPAPVPPSSPPPPPPSAPVPSRSPPPPPPSSNPPNSTSPPPPPQPSPSAPPPPRNSPPPPATTLPPASPPLNSPSPPAAPPPRNSTRSPPPPPPPVHSPSPGSSPPPAPEPSNPPSRISPPPTPSSSPAPPSNSTPSSSPPPPAVTQLSPPSPSPSKVSSPPSPTPNPTASGGGISTAGVVAITVAAGFLLLGFIGVLIWCMRRQKRKIPVNGGYVMPSTLASSPESDSSFFKTHSSAPLVQSGSGSDVVYTPSDPGGLGHSRSWFSYEELIKATNGFSSQNLLGEGGFGCVYKGHLPDGREIAVKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIEDNRRLLVYDYVPNNTLYFHLHGENQPVLEWANRVKIAAGAARGLTYLHEDCNPRIIHRDIKSSNILLDFNYEAKVSDFGLAKLALDANTHITTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDVSQPLGDESLVEWARPLLSHAIDTEEFSSLADPRLEKNYIESELYCMIEVAAACVRHSASKRPRMGQVVRAFDSLGGSDLTNGMQLGESEVFDSAQQSEEIRLFRRMAFGSQNYSTDFFSRASLNP 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00426 719 FunFam Proline-rich receptor-like protein kinase PERK8 365 467 - -
Viun2g00426 719 ProSiteProfiles Protein kinase domain profile. 392 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00426 719 ProSitePatterns Protein kinases ATP-binding region signature. 398 420 IPR017441 GO:0005524
Viun2g00426 719 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 300 700 IPR047117 -
Viun2g00426 719 Pfam Protein tyrosine and serine/threonine kinase 395 664 IPR001245 GO:0004672|GO:0006468
Viun2g00426 719 Gene3D Transferase(Phosphotransferase) domain 1 468 678 - -
Viun2g00426 719 FunFam proline-rich receptor-like protein kinase PERK8 468 679 - -
Viun2g00426 719 SUPERFAMILY Protein kinase-like (PK-like) 374 663 IPR011009 -
Viun2g00426 719 MobiDBLite consensus disorder prediction 1 285 - -
Viun2g00426 719 Gene3D Phosphorylase Kinase; domain 1 372 467 - -
Viun2g00426 719 MobiDBLite consensus disorder prediction 10 282 - -
Viun2g00426 719 SMART serkin_6 392 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00426 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672|GO:0006468
Viun2g00426 719 CDD STKc_IRAK 398 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00426 Viun-Chr2 8446962 8451231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00426 160 715 Trihelix Transcription Factor Family AT5G38560 56.228 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Viun2g00426 PK_Tyr_Ser-Thr 7.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00426 - - vun:114173712 891.338