Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00425 ATGCAGACACGACACACAAAAAACACACCCTCAATTCAAACATGTTCTACTAGGTTGAAAATTCATCAATGTTTATTGCCTTCTACTCAGAAGAAGAAAACGCGTTCAGGAAGGAGAAGAGAACATGGGTACTGTTCAAACAAGGCAAAGAAAAGATTCACACGTGACATGTCGGCAGCGTCACCGTCTCCGGCGGCATCCACGCTTTCTCCACCGCCACAAACACCACCCTCCTCCACTAGTCCCTCACCATCCAACGACACCACTCCTCCGCCGCAACAACCTCCTTCTTCCACTTCTCCTCCGCAGCGAACCCCTTCTTCCACTTCTCCGCCACAACCAGCAGAATCTCCGCCTCCGCTAACCCCATCTCCGGCGTCTCCGCCGCCGTCACCGCCACCTAGTTCTTCACCTCCCCCCGTGTCTGGAATAACCCCTCCACCAGTACCTCCGCCGTCACCACCACCATCTTCGCCGCAGCCATCTCCTCCTCCTCCGCCTTCTCCGGATGCACCGGCACCGGTGCCACCGAGCTCTCCACCGCCACCACCACCATCAGCACCAGTTCCATCAAGAAGCCCTCCGCCACCGCCACCATCATCGAACCCTCCTAATAGCACATCTCCACCACCACCACCACAACCATCACCATCAGCTCCACCGCCGCCGCGAAATTCGCCACCACCGCCGGCCACCACGTTGCCACCAGCCTCGCCACCACTAAATTCACCATCTCCTCCGGCTGCACCGCCCCCAAGAAACTCAACAAGGTCACCGCCGCCACCTCCGCCACCTGTGCATTCGCCGTCACCGGGGTCATCGCCGCCGCCAGCACCTGAACCATCCAACCCACCTTCTAGGATTAGTCCTCCTCCCACACCAAGTTCCTCACCAGCTCCCCCTTCAAATTCTACGCCAAGCTCATCACCTCCACCACCTGCAGTTACTCAATTATCCCCGCCATCGCCATCCCCCTCGAAAGTTTCATCGCCCCCATCCCCTACTCCGAACCCCACAGCCTCTGGAGGTGGAATCAGCACTGCTGGTGTAGTGGCTATTACTGTGGCGGCTGGATTTCTGCTTCTTGGCTTCATCGGTGTTCTTATATGGTGCATGAGAAGGCAAAAGAGAAAGATTCCTGTGAATGGTGGTTATGTCATGCCATCCACTCTTGCCTCCTCTCCTGAATCAGATTCATCGTTTTTTAAAACACATTCCTCAGCTCCTCTTGTGCAAAGTGGCTCTGGCAGTGATGTTGTGTACACGCCATCTGATCCTGGTGGACTAGGCCACTCAAGGTCATGGTTTTCATATGAAGAACTGATTAAGGCCACAAATGGTTTCTCAAGTCAAAATCTTTTGGGTGAGGGAGGATTTGGTTGTGTGTATAAAGGGCACCTTCCTGATGGAAGGGAGATAGCAGTGAAACAACTCAAGATTGGTGGAGGCCAGGGAGAGAGAGAATTCAAAGCTGAAGTGGAAATTATCAGTCGTATACATCACCGCCATTTGGTTTCTTTAGTTGGATACTGCATTGAAGACAACAGAAGACTACTTGTCTATGACTACGTTCCTAACAATACCCTTTACTTCCATCTACATGGGGAAAACCAGCCTGTGCTAGAATGGGCAAACCGTGTTAAAATTGCAGCTGGCGCAGCCCGAGGACTAACTTATCTCCATGAAGATTGCAATCCTCGGATCATTCACAGGGATATCAAGTCGTCAAACATTCTTTTAGATTTCAATTATGAAGCTAAGGTCTCAGATTTTGGGCTTGCCAAATTAGCTCTTGATGCAAATACACATATTACCACGCGTGTCATGGGAACTTTTGGGTATGTTGCCCCTGAATATGCTTCAAGTGGTAAATTGACTGAGAAGTCTGATGTATATTCTTTTGGAGTCGTGCTTTTGGAGCTAATTACCGGCCGGAAGCCGGTAGATGTATCCCAACCTCTGGGAGATGAAAGCCTGGTTGAATGGGCTCGTCCTTTACTGAGTCATGCAATCGATACTGAGGAATTCAGTAGTTTGGCAGATCCAAGGCTAGAAAAGAATTACATCGAGAGTGAATTGTATTGCATGATTGAGGTTGCCGCAGCTTGTGTGCGGCATTCAGCTTCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGGAGGTTCTGATCTAACAAATGGAATGCAACTTGGAGAAAGTGAGGTGTTTGACTCTGCACAACAATCTGAAGAAATAAGATTATTTCGGAGAATGGCATTTGGTAGTCAAAATTATAGCACAGATTTCTTTAGCCGTGCTAGTCTGAATCCATGA 2328 0.5017 MQTRHTKNTPSIQTCSTRLKIHQCLLPSTQKKKTRSGRRREHGYCSNKAKKRFTRDMSAASPSPAASTLSPPPQTPPSSTSPSPSNDTTPPPQQPPSSTSPPQRTPSSTSPPQPAESPPPLTPSPASPPPSPPPSSSPPPVSGITPPPVPPPSPPPSSPQPSPPPPPSPDAPAPVPPSSPPPPPPSAPVPSRSPPPPPPSSNPPNSTSPPPPPQPSPSAPPPPRNSPPPPATTLPPASPPLNSPSPPAAPPPRNSTRSPPPPPPPVHSPSPGSSPPPAPEPSNPPSRISPPPTPSSSPAPPSNSTPSSSPPPPAVTQLSPPSPSPSKVSSPPSPTPNPTASGGGISTAGVVAITVAAGFLLLGFIGVLIWCMRRQKRKIPVNGGYVMPSTLASSPESDSSFFKTHSSAPLVQSGSGSDVVYTPSDPGGLGHSRSWFSYEELIKATNGFSSQNLLGEGGFGCVYKGHLPDGREIAVKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIEDNRRLLVYDYVPNNTLYFHLHGENQPVLEWANRVKIAAGAARGLTYLHEDCNPRIIHRDIKSSNILLDFNYEAKVSDFGLAKLALDANTHITTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDVSQPLGDESLVEWARPLLSHAIDTEEFSSLADPRLEKNYIESELYCMIEVAAACVRHSASKRPRMGQVVRAFDSLGGSDLTNGMQLGESEVFDSAQQSEEIRLFRRMAFGSQNYSTDFFSRASLNP 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00425 775 MobiDBLite consensus disorder prediction 66 338 - -
Viun2g00425 775 FunFam proline-rich receptor-like protein kinase PERK8 524 735 - -
Viun2g00425 775 CDD STKc_IRAK 454 724 - -
Viun2g00425 775 SUPERFAMILY Protein kinase-like (PK-like) 430 719 IPR011009 -
Viun2g00425 775 ProSitePatterns Protein kinases ATP-binding region signature. 454 476 IPR017441 GO:0005524
Viun2g00425 775 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 356 756 IPR047117 -
Viun2g00425 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 568 580 IPR008271 GO:0004672|GO:0006468
Viun2g00425 775 FunFam Proline-rich receptor-like protein kinase PERK8 421 523 - -
Viun2g00425 775 MobiDBLite consensus disorder prediction 40 55 - -
Viun2g00425 775 Gene3D Phosphorylase Kinase; domain 1 428 523 - -
Viun2g00425 775 ProSiteProfiles Protein kinase domain profile. 448 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00425 775 Pfam Protein tyrosine and serine/threonine kinase 451 720 IPR001245 GO:0004672|GO:0006468
Viun2g00425 775 SMART serkin_6 448 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00425 775 Gene3D Transferase(Phosphotransferase) domain 1 524 734 - -
Viun2g00425 775 MobiDBLite consensus disorder prediction 25 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00425 Viun-Chr2 8446914 8451231 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00425 216 771 Trihelix Transcription Factor Family AT5G38560 56.228 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Viun2g00425 PK_Tyr_Ser-Thr 8.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00425 - - vun:114173712 891.338