Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00387 ATGACCAAACCCAACACGTTCTTTCACAATCTCATCAAGCCCTTCAAATTCAGTTCCAGTAAAGAGGAACATAGCGAAGATGATATGCAGAACTTAGCTGCACAGGAGAATAAGGTCTTCTCTTACGAAACATTGGTCGCTGCTACAAACAAATTTAGCATTCTTAACAAACTTGGTGAAGGAGGATTTGGACCCGTCTTTAAGGGGAAATTGAGTGACGGGAGAGAGATTGCAGTGAAGAGGTTATCGCGTAGATCGAATCAAGGGAAGACCCAGTTCATCAACGAGGCCAAGTTGTTGGGTCGTGTGCAGCACCGAAATGTGGTGAATCTGATCGGTTACTGCGCTCATGCCTCCGAGAAGCTTCTTGTTTATGAGTATGTCCCTCACAAGAGCCTTGACAAGTTTCTCTTCAAAACGGGGAAGAAAGAAGAGCTAAACTGGAAATGTAGATTTGACATCATCAATGGGGTGGGAAGGGGTCTGCTTTATCTTCACGAAGACTCTCACAACTGCATAATCCATCGCGACATAAAGGCCAGTAACATCTTACTGGATGAAAAATGGGGGCCTAAGATAGCAGATTTTGGTCTCGCCAGACTCTTCCCCGAAGACCAAACCCACGTCAACACCCGTGTGGCTGGAACCAACGGGTATTTGGCTCCAGAATATTTAATGTATGGCCATTTATCTGTGAAGGCTGACGTATTTAGCTATGGAGTTTTGGTGTTGGAATTGGTCACTGGCCGGAGAAATTCCTCCTTTGATGCCAACTCGAGTGCGCAGAATCTCCTCGACTGGGCATACTGGCTATACAAGAAGGGGAGGGCCTTGGAAATGGTGGACCCTGCATTGGGGTCTTCAGTGATAACAGAACAAGTAGAAATGTGCATTAAACTGGGTCTGTTGTGCACCCAAGGTGATCCAAACCAGCGTCCAACCATGGGACGTGTGGTGGTGATGCTGTCAAAGAAATCGAACCACATGGAAGAACCGACAAGACCAGGAATGGCTGGTTCCAGATTCAGAAGAGTGCCTCACAGACCCTCTGCAACGTTTTCTTCTGGGCTTGATGATGACTCTCATTCGCACACCGGTGATTCAAGCACCTATGGCACTAATAATAATACCACTTCTGCAACATCATCAACAACACCAAGCTCCAGTGCTACTGCAGAAGTAGACCCCAGAGGGAAACGACCAATGCAAGGTTAG 1215 0.4683 MTKPNTFFHNLIKPFKFSSSKEEHSEDDMQNLAAQENKVFSYETLVAATNKFSILNKLGEGGFGPVFKGKLSDGREIAVKRLSRRSNQGKTQFINEAKLLGRVQHRNVVNLIGYCAHASEKLLVYEYVPHKSLDKFLFKTGKKEELNWKCRFDIINGVGRGLLYLHEDSHNCIIHRDIKASNILLDEKWGPKIADFGLARLFPEDQTHVNTRVAGTNGYLAPEYLMYGHLSVKADVFSYGVLVLELVTGRRNSSFDANSSAQNLLDWAYWLYKKGRALEMVDPALGSSVITEQVEMCIKLGLLCTQGDPNQRPTMGRVVVMLSKKSNHMEEPTRPGMAGSRFRRVPHRPSATFSSGLDDDSHSHTGDSSTYGTNNNTTSATSSTTPSSSATAEVDPRGKRPMQG 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00387 404 Pfam Protein kinase domain 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00387 404 FunFam Cysteine-rich receptor-like protein kinase 2 128 330 - -
Viun2g00387 404 MobiDBLite consensus disorder prediction 324 404 - -
Viun2g00387 404 SUPERFAMILY Protein kinase-like (PK-like) 37 336 IPR011009 -
Viun2g00387 404 Gene3D Transferase(Phosphotransferase) domain 1 128 337 - -
Viun2g00387 404 Gene3D Phosphorylase Kinase; domain 1 14 127 - -
Viun2g00387 404 CDD STKc_IRAK 58 324 - -
Viun2g00387 404 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Viun2g00387 404 SMART serkin_6 52 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00387 404 ProSiteProfiles Protein kinase domain profile. 52 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00387 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Viun2g00387 404 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 380 - -
Viun2g00387 404 MobiDBLite consensus disorder prediction 366 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00387 Viun-Chr2 7674469 7679358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00387 40 340 Receptor kinase-like Gene Family AT4G11530 52.145 6.01e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun2g00387 Pkinase 7.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00387 - - gmx:100811523 600.512