Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00386 ATGACCAAACCCAACACGTTCTTTCACAATCTCATCAAGCCCTTCAAATTCAGTTCCAGTAAAGGTAAAGAGGAACATAGCGAAGATGATATGCAGAACTTAGCTGCACAGGAGAATAAGGTCTTCTCTTACGAAACATTGGTCGCTGCTACAAACAAATTTAGCATTCTTAACAAACTTGGTGAAGGAGGATTTGGACCCGTCTTTAAGGGGAAATTGAGTGACGGGAGAGAGATTGCAGTGAAGAGGTTATCGCGTAGATCGAATCAAGGGAAGACCCAGTTCATCAACGAGGCCAAGTTGTTGGGTCGTGTGCAGCACCGAAATGTGGTGAATCTGATCGGTTACTGCGCTCATGCCTCCGAGAAGCTTCTTGTTTATGAGTATGTCCCTCACAAGAGCCTTGACAAGTTTCTCTTCAAAACGGGGAAGAAAGAAGAGCTAAACTGGAAATGTAGATTTGACATCATCAATGGGGTGGGAAGGGGTCTGCTTTATCTTCACGAAGACTCTCACAACTGCATAATCCATCGCGACATAAAGGCCAGTAACATCTTACTGGATGAAAAATGGGGGCCTAAGATAGCAGATTTTGGTCTCGCCAGACTCTTCCCCGAAGACCAAACCCACGTCAACACCCGTGTGGCTGGAACCAACGGGTATTTGGCTCCAGAATATTTAATGTATGGCCATTTATCTGTGAAGGCTGACGTATTTAGCTATGGAGTTTTGGTGTTGGAATTGGTCACTGGCCGGAGAAATTCCTCCTTTGATGCCAACTCGAGTGCGCAGAATCTCCTCGACTGGGCATACTGGCTATACAAGAAGGGGAGGGCCTTGGAAATGGTGGACCCTGCATTGGGGTCTTCAGTGATAACAGAACAAGTAGAAATGTGCATTAAACTGGGTCTGTTGTGCACCCAAGGTGATCCAAACCAGCGTCCAACCATGGGACGTGTGGTGGTGATGCTGTCAAAGAAATCGAACCACATGGAAGAACCGACAAGACCAGGAATGGCTGGTTCCAGATTCAGAAGAGTGCCTCACAGACCCTCTGCAACGTTTTCTTCTGGGCTTGATGATGACTCTCATTCGCACACCGGTGATTCAAGCACCTATGGCACTAATAATAATACCACTTCTGCAACATCATCAACAACACCAAGCTCCAGTGCTACTGCAGAAGTAGACCCCAGAGGGAAACGACCAATGCAAGGTTAG 1221 0.4676 MTKPNTFFHNLIKPFKFSSSKGKEEHSEDDMQNLAAQENKVFSYETLVAATNKFSILNKLGEGGFGPVFKGKLSDGREIAVKRLSRRSNQGKTQFINEAKLLGRVQHRNVVNLIGYCAHASEKLLVYEYVPHKSLDKFLFKTGKKEELNWKCRFDIINGVGRGLLYLHEDSHNCIIHRDIKASNILLDEKWGPKIADFGLARLFPEDQTHVNTRVAGTNGYLAPEYLMYGHLSVKADVFSYGVLVLELVTGRRNSSFDANSSAQNLLDWAYWLYKKGRALEMVDPALGSSVITEQVEMCIKLGLLCTQGDPNQRPTMGRVVVMLSKKSNHMEEPTRPGMAGSRFRRVPHRPSATFSSGLDDDSHSHTGDSSTYGTNNNTTSATSSTTPSSSATAEVDPRGKRPMQG 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00386 406 ProSiteProfiles Protein kinase domain profile. 54 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00386 406 SUPERFAMILY Protein kinase-like (PK-like) 39 338 IPR011009 -
Viun2g00386 406 CDD STKc_IRAK 60 326 - -
Viun2g00386 406 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 23 382 - -
Viun2g00386 406 MobiDBLite consensus disorder prediction 368 394 - -
Viun2g00386 406 SMART serkin_6 54 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00386 406 Pfam Protein kinase domain 55 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00386 406 FunFam Cysteine-rich receptor-like protein kinase 2 130 332 - -
Viun2g00386 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Viun2g00386 406 Gene3D Phosphorylase Kinase; domain 1 16 129 - -
Viun2g00386 406 FunFam Cysteine-rich receptor-like protein kinase 10 16 129 - -
Viun2g00386 406 Gene3D Transferase(Phosphotransferase) domain 1 130 339 - -
Viun2g00386 406 MobiDBLite consensus disorder prediction 326 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00386 Viun-Chr2 7674469 7679375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00386 19 342 Receptor kinase-like Gene Family AT4G11530 49.693 4.47e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun2g00386 Pkinase 7.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00386 - - gmx:100811523 611.683