Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00341 ATGTCATCACCGACAGGCGCGGAGGCGCCGCTGTTCCACAACCGCCACGACGCCGCCCGAGCGCCCGCGCTAGCGGTCCTCCTCGGTCGAGCCGGCGGCCGCCCAGACCCCTCCATGCTGGTGACCGCGGTGTGCGATTTCATCTCGGACTTGATCCACTCTAAGCCGGTGTTGGCCCTCGAGATGTCGTGGAACATGGCCTTCGTGTTTGTCTCGGCCGCGATGCTTGCATGCACCACCAGCGAGCGGCCGAACTCGCCGATCCGTTTGTGGATCGTCGGGTACGTTCTGCTGCGCTTTATGCATGTGGTGCTCCTCTGGCTCACGTACCGGCATCATCGTAGCCGGTGGGAGTCGCACCGTGGCCAGGGGACGCAGGACGTTGAGAGCCAAACCGGCAGCGACGATGATGAGGGTGGCAACGATAGCGACAGCGTCGTGGATGGGAGCTCTGGCAATTCGTCTTGCCGGTTCTTAAAACGATGTGAATCATTAATTTCTAGGGTTTCACTCCTTTGGTGGTTAGTGGGCTTTTACTGGGTTGTCTCTGGTGGCGATATACTTCTGCAAGATGCCCCACGATTGTACTGGTTATCTGTTGTCATTCTGGCATTTGATGTCTGTTTTGTTATCTTTAATGTTGTCATGATGTGCTTGGTTGGTATTGCTCTGTGTTGTTGTTTGCCCGGCATCATTGCTATTCTGTATGGGGTTGCAGGACAGGAAGGTGCGTCAGAAGCAGATCTTAGCATACTTCCAAAATACAGATTTCGAATACTAAGCAATGAGGATAAGCCCAGTGGTGGAGCTGGATCAATGGTTCCCATAGAAACCAGCAGTGCTTACTTGGCAAATGAACGACTGCTTTTACCAGAGGATACGGAATGTTGTATATGCCTCTATTCATACGAAGATGAAGCGGAGCTCCATGCTCTTCCTTGCAATCATCATTTTCATTCTTCATGCATAGTGAAATGGTTGAAAATGAATGCCACTTGTCCTCTTTGCAAATACAATATTCTCAAGGGAAACGAACAAGTGTGA 1044 0.5192 MSSPTGAEAPLFHNRHDAARAPALAVLLGRAGGRPDPSMLVTAVCDFISDLIHSKPVLALEMSWNMAFVFVSAAMLACTTSERPNSPIRLWIVGYVLLRFMHVVLLWLTYRHHRSRWESHRGQGTQDVESQTGSDDDEGGNDSDSVVDGSSGNSSCRFLKRCESLISRVSLLWWLVGFYWVVSGGDILLQDAPRLYWLSVVILAFDVCFVIFNVVMMCLVGIALCCCLPGIIAILYGVAGQEGASEADLSILPKYRFRILSNEDKPSGGAGSMVPIETSSAYLANERLLLPEDTECCICLYSYEDEAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00341 347 SUPERFAMILY RING/U-box 284 341 - -
Viun2g00341 347 CDD RING-H2_PA-TM-RING 295 337 - -
Viun2g00341 347 ProSiteProfiles Zinc finger RING-type profile. 296 337 IPR001841 -
Viun2g00341 347 FunFam E3 ubiquitin protein ligase RIE1 276 344 - -
Viun2g00341 347 SMART FANCL_C_2 292 344 - -
Viun2g00341 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 345 IPR013083 -
Viun2g00341 347 SMART ring_2 296 336 IPR001841 -
Viun2g00341 347 PANTHER TARGET OF ERK KINASE MPK-1 33 345 - -
Viun2g00341 347 MobiDBLite consensus disorder prediction 121 153 - -
Viun2g00341 347 Pfam Ring finger domain 295 337 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00341 Viun-Chr2 6996594 7005704 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00341 3 346 C3H Transcription Factor Family AT1G68070 55.932 1.22e-135 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00341 - K13148 gmx:100816519 474.552