Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00339 ATGTTAGTCTCCAACGCACTCAGGTCAACAAAACTTGTGTCATGGAAACCTACGGGGCGGCTTCAGCAAACCCTAGCGGGATGCGTGGAGAGGAACGGCGTGGGTTTGCATTCGGGGAGGGTTTGGTCGGTGAGGATGTGGCCGGAGCTCGCTTCCCGAGGCAGGTACTTCGAATTTCGTTGCCGTTCAATTCCCGCCGCCGTCGAGTTCGCTCAGGTCTCGCCGCTGTGCACCACTCTGAGCAAGGACGGGTTCCGAATTCGAACCGTGGAGCATTTGCTTTCGGCTTTGGAGGCTTTGGGTGTTGATAACTGCAGGATTGAGATTGAGGGTTTTGATGATAAAGAGAACGACGCTGAGATTCCTATATTTGATGGGTCAGCAAGGGAATGGGTGGAAGCAGTGGAAGAAGTTGGTTTAGCGGTGGCCACTGATCTTGATGGCAATAGTGTTGAGAAAATGGCACCACATGTGAATGAACCCGTGTGTGCTTGGAGTAATGATTCTTTTGTCGCTGCATTTCCTTCTACAGCGGTTCAAATAACTTATGGCATCAACTTTCCGCAGGCACCTGCTATTGGCTGCCAGTGGTTTTCTACTTCCCCATTGGATAATTTGGTTTATTCCACACAGATAGCTCTGTCAAGAACCTTCTGCATTTATGAGGAGATTGAGCCTATGCGCAATGCTGGACTTATCAAAGGAGGTTCTCTAGAGAATGCCATTGTATGCAGTGGCAATAAAGGTTGGTTGAATCCACCTCTGCATTTCAGTGATGAACCATGTCGTCACAAGATCTTAGACCTCATTGGTGATCTCTCGATGGTTGCTCAATCTGGGAATCAAGGACTTCCAGTAGCACACATCATAGCTTACAAGGGTGGCCATGCATTGCATGCTGATTTGGCACGCCGGCTGATAGGAATGAGTTGA 933 0.492 MLVSNALRSTKLVSWKPTGRLQQTLAGCVERNGVGLHSGRVWSVRMWPELASRGRYFEFRCRSIPAAVEFAQVSPLCTTLSKDGFRIRTVEHLLSALEALGVDNCRIEIEGFDDKENDAEIPIFDGSAREWVEAVEEVGLAVATDLDGNSVEKMAPHVNEPVCAWSNDSFVAAFPSTAVQITYGINFPQAPAIGCQWFSTSPLDNLVYSTQIALSRTFCIYEEIEPMRNAGLIKGGSLENAIVCSGNKGWLNPPLHFSDEPCRHKILDLIGDLSMVAQSGNQGLPVAHIIAYKGGHALHADLARRLIGMS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00339 310 NCBIfam UDP-3-O-acyl-N-acetylglucosamine deacetylase 22 306 IPR004463 GO:0008759|GO:0009245
Viun2g00339 310 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 307 IPR020568 -
Viun2g00339 310 SUPERFAMILY Ribosomal protein S5 domain 2-like 21 141 IPR020568 -
Viun2g00339 310 Hamap UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 20 310 IPR004463 GO:0008759|GO:0009245
Viun2g00339 310 Gene3D lpxc deacetylase, domain 2 157 310 IPR011334 GO:0008759|GO:0009245
Viun2g00339 310 Gene3D lpxc deacetylase, domain 1 20 145 IPR015870 GO:0008759|GO:0009245
Viun2g00339 310 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 22 307 IPR004463 GO:0008759|GO:0009245
Viun2g00339 310 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 5 308 IPR004463 GO:0008759|GO:0009245
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00339 Viun-Chr2 6955725 6966342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00339 9 306 Carbohydrate Esterase AT1G25054 65.101 4.51e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00339 K02535 - gmx:100814465 511.916