Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00321 ATGGATCACCCAAATCCACCACTCTCCTCCCAACCCAAACTCGCTTCAGAGTCGACGCTCCACCGCGCCACTCCCACCTCTAACCGTTTCCGCAGCTCCCAGCTTCTCAGGGAGAGAGAAGGCAAGGGTGAAGGGGAAAAGGAGGATTCGAGTGCCTCACGGAAGGTTCTGAAAGCTGACCGCGAGAAACTCCGAAGGGATCGACTCAACGAACACTTCCAAGAGTTGGGAAACACGTTAGATCCGGATAGACCCAAGAATGACAAGGCAACTATCCTTACTGAAACCGTCCAAATGCTAAAGGACTTAACTGCTGAAGTTAATAGGCTTAAAACTGAACATAAAGCACTTTCTGAAGAGTCACACGAACTAATGCAGGAAAAGAATGAACTCAGAGAAGAGAAGACATCTCTTAAATCTGATATAGAAAATCTCAATGCCCAGTATCAGCAGAGAGTGAGAATCATGTTCCCATGGACTGCAATTGACCATTCTGTTGTCATTAGTCCACCGTACTCTTATCCACTTCCTATACCTATCCCTCCTGCTCCAATTTCCATCCACCCATCTCTTCAACCTTTTCCTTTCTTTGGAAACCAAAACCCTGGTCCGATTCCTAGTCCTTGTTCAATGTATGTCCCATATTCTACTCCAACTAACGCCCCAGTTGATCCACCATCTGTGCTGTATGCTTCCACATCCCACGTGTCGAACCAGAGGGAATCTTTTAGCAAGTCATCGGGTAATAGAAGACCTGGTAGTGATGCTGAAAGATGTAGCGAGTCTCATGATGTGGCCACAGAACTTGAACTTAAGATGCCTGGATCATCATCAACACAGCAGGATTGCACTTCTGGAGGAAGGAAGGGCAAGCATTCAGTGATAAGAGATAGAACAATCATAGGTGGGAGTGCTGGGAGTGCTTCAAGCCGTTATTCTTCTTCTCAAGGACTTCAAGATAGCTCCAACAGTGTGAGTGACATTCCAAAGACTGATTGA 999 0.4645 MDHPNPPLSSQPKLASESTLHRATPTSNRFRSSQLLREREGKGEGEKEDSSASRKVLKADREKLRRDRLNEHFQELGNTLDPDRPKNDKATILTETVQMLKDLTAEVNRLKTEHKALSEESHELMQEKNELREEKTSLKSDIENLNAQYQQRVRIMFPWTAIDHSVVISPPYSYPLPIPIPPAPISIHPSLQPFPFFGNQNPGPIPSPCSMYVPYSTPTNAPVDPPSVLYASTSHVSNQRESFSKSSGNRRPGSDAERCSESHDVATELELKMPGSSSTQQDCTSGGRKGKHSVIRDRTIIGGSAGSASSRYSSSQGLQDSSNSVSDIPKTD 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00321 332 PANTHER TRANSCRIPTION FACTOR BHLH121 32 331 IPR044579 GO:0003700|GO:0006879
Viun2g00321 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 124 IPR036638 GO:0046983
Viun2g00321 332 MobiDBLite consensus disorder prediction 272 287 - -
Viun2g00321 332 MobiDBLite consensus disorder prediction 251 268 - -
Viun2g00321 332 Coils Coil 93 148 - -
Viun2g00321 332 MobiDBLite consensus disorder prediction 9 32 - -
Viun2g00321 332 Gene3D - 51 136 IPR036638 GO:0046983
Viun2g00321 332 MobiDBLite consensus disorder prediction 224 250 - -
Viun2g00321 332 MobiDBLite consensus disorder prediction 1 68 - -
Viun2g00321 332 MobiDBLite consensus disorder prediction 33 68 - -
Viun2g00321 332 CDD bHLH_AtILR3_like 58 132 - -
Viun2g00321 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 103 IPR011598 GO:0046983
Viun2g00321 332 Pfam Helix-loop-helix DNA-binding domain 54 103 IPR011598 GO:0046983
Viun2g00321 332 SMART finulus 59 109 IPR011598 GO:0046983
Viun2g00321 332 MobiDBLite consensus disorder prediction 303 332 - -
Viun2g00321 332 MobiDBLite consensus disorder prediction 224 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00321 Viun-Chr2 6338815 6343153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00321 43 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 57.322 3.62e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun2g00321 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00321 - - gmx:100818281 429.869