Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00307 ATGTCTCTCTCCACTCCTTCCTTCTTCTTCCTCACCTTCTTCTTCTTCCTCTTCAATCTTCAACCATCTTTCTCCCAACACCAATTCTCATCCTTCAACATCTCAAATTCTCCATGGCAACCATCTCAGAACAGAACTCTTCTCTCTCCCAACAAAAACTTCACTGCCGGTTTCTCTCCCGTGCCAAACTCCAACAATCTCTTCATCTTTTCCATTTGGTATTCCAAAGTCCCTAAAACTGCCAACAATATTGTGTGGAGTGACACCACCCAAGTGAACAGTTCTGGCTCTCTTGTTATCACCTCAAAATCAGAACTTCTCCTCGATGGTTCACCCTTTCAAGGAACTGCCGACACTAATGCTTCCCGACTTGAACTGAAGGACAATGGAGAGTTGGCTTTTGGGAACTGGAGTAGCTTCAAGAACCCCACCAACACCGTTTTGCCCAACCAGAGCTTCACAGGGATTGAGCTTCTCTCCAACAATGGGAAATTCAGGTTCACCAAGTCTCAGTTTCTGGTCCTCAACTCCACCTCTGATCAGTACTATAGCACCCCAAATCCCTTGCTGAGCATGGACGATGCAGGGAAAATGAGCATGCAAGGTAACTCTTTTCTCACTTCTGATTACGGAGACCCCAGATTCAGGAAAGTGGTCCTTGATGATGATGGGAATCTCAGGATCTATAGCTTCTACCCTGAGCAGAATAACCAGTGGCTTGAGGTTTGGAAAGGGATATGGGAGATGTGCACGATCAAAGGCAAATGTGGGTCTAATGCAATCTGTGTGCCTGGAGAGGATTTGAACTCTTCCACTCATTGTGATTGCCCATCTGGGTTCACCCCAAACCAAGGTGGGTCTGAAGAGGGTTGCACAAGGAAAATCTCTCTCTCCCAAAGCACCCAATTTCTGAGGCTGGACTATGTGAACTTCACCAGTGATGGTAATCTGAACAAGATTAAAGCTGACAACTTCACAATCTGTGAGTCCGGTTGCTCAAGAGATAAAACTTGTCTTGGATTTGGGTTCAAATATGATGGATCTGGCTACTGTGTGTGGGTGACTGGAACAAATCTTCGATTTGGATACTGGTCACCAGGCACTGAGGCTGCCTTTTTTCTCAAAGTTGATAAATCTGAGTCAACACCATCCAACTTCATTGGCCTGACTGAGGTGATGCAAACCACATGCCCAGTGAACTTAAGCCTGCCACTGCCCCCAAAGGACTCAAACACAACAGCCAGAAACATAGCCATAATATGCACACTTTTTGCTGCAGAACTCATAGCTGGGGTGGCCTTCTTCTGGTCCTTCCTCAAGAGGTACATCAAGTATAGGGACATGGCCACCACACTAGGCCTGGAGCTTCTCCCTGCTGGGGGTCCCAAGAGGTTCACCTACTCAGAAATCAAGGCTGCCACCAATGACTTCTCCAATCTCATAGGCAAAGGAGGCTTTGGAGATGTCTACAAAGGTGAGTTGCCAGACCACAGGGTAGTGGCGGTGAAGTGCCTCAAGAATGTCACAGGTGGTGATGCTGAGTTCTGGGCAGAAGTCACAATCATTGCCAGAATGCACCACCTCAACTTGGTGAGGCTGTGGGGGTTCTGTGCTGAGAAGGGTCAAAGAATACTAGTCTATGAACACATTCCCTGTGGCTCATTGGACAAGTACCTCTTCAGGGTCAACAAGTCTCACAGTAATAACAACAACCATCTCAAGGACCAAACAAATCCAAACACACCACAGCAGAAGCCAGTTTTGGATTGGAGCATGAGGTACAGAATAGCCCTTGGTGTGGCAAGGGCTATTGCCTACTTGCACGAGGAGTGTTTGGAGTGGGTTTTGCACTGTGACATCAAGCCTGAGAACATCTTGCTAGGTGATGATTTTTGCCCCAAAATCTCAGATTTTGGGCTGGCCAAGTTGAGGAAAAAGGAGGACATGGTGACCATGTCAAGGAGGAGAGGCACACCAGGGTACATGGCACCTGAATGGATCACAGCCGACCCAATCACTTCAAAAGCTGATGTGTATAGTTTTGGCATGGTGCTTTTGGAGCTTGTGAGTGGAATTAGGAACTTTGAGATTCAAGATTCTGTGCTTAGGAGTGAGGAGTGGTACTTTCCTGGTTGGGCCTTTGATAAAATGTTTAAGGAGATGAGAGTGGAGGAGATTTTGGATGCACAGATTAGGAATGCTTATGATAGCAGAACCCACTTTGACATGGTTAATAGGATGGTGAAGACTGCCATGTGGTGTCTACAAGATAGGCCTGAGTTGAGGCCCACTATGGGTAAGGTGGCCAAGATGTTGGAAGGGACTGTGGAGATCCTTGAGCCCAAGAAGCCCACTGTTTTCTTCCTTGGAGAAGAGTAG 2379 0.4708 MSLSTPSFFFLTFFFFLFNLQPSFSQHQFSSFNISNSPWQPSQNRTLLSPNKNFTAGFSPVPNSNNLFIFSIWYSKVPKTANNIVWSDTTQVNSSGSLVITSKSELLLDGSPFQGTADTNASRLELKDNGELAFGNWSSFKNPTNTVLPNQSFTGIELLSNNGKFRFTKSQFLVLNSTSDQYYSTPNPLLSMDDAGKMSMQGNSFLTSDYGDPRFRKVVLDDDGNLRIYSFYPEQNNQWLEVWKGIWEMCTIKGKCGSNAICVPGEDLNSSTHCDCPSGFTPNQGGSEEGCTRKISLSQSTQFLRLDYVNFTSDGNLNKIKADNFTICESGCSRDKTCLGFGFKYDGSGYCVWVTGTNLRFGYWSPGTEAAFFLKVDKSESTPSNFIGLTEVMQTTCPVNLSLPLPPKDSNTTARNIAIICTLFAAELIAGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKGELPDHRVVAVKCLKNVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEHIPCGSLDKYLFRVNKSHSNNNNHLKDQTNPNTPQQKPVLDWSMRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITADPITSKADVYSFGMVLLELVSGIRNFEIQDSVLRSEEWYFPGWAFDKMFKEMRVEEILDAQIRNAYDSRTHFDMVNRMVKTAMWCLQDRPELRPTMGKVAKMLEGTVEILEPKKPTVFFLGEE 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00307 792 Pfam S-locus glycoprotein domain 211 283 IPR000858 GO:0048544
Viun2g00307 792 FunFam S-receptor-like serine/threonine-protein kinase 447 549 - -
Viun2g00307 792 SMART serkin_6 475 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00307 792 PANTHER OS07G0415500 PROTEIN 6 787 - -
Viun2g00307 792 Gene3D Phosphorylase Kinase; domain 1 449 549 - -
Viun2g00307 792 ProSiteProfiles PAN/Apple domain profile. 291 377 IPR003609 -
Viun2g00307 792 Gene3D Transferase(Phosphotransferase) domain 1 553 783 - -
Viun2g00307 792 FunFam Serine/threonine-protein kinase 550 783 - -
Viun2g00307 792 CDD STKc_IRAK 481 774 - -
Viun2g00307 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Viun2g00307 792 PIRSF SRK 1 792 IPR024171 GO:0004674
Viun2g00307 792 Pfam Protein kinase domain 479 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00307 792 ProSiteProfiles EGF-like domain profile. 246 286 IPR000742 -
Viun2g00307 792 CDD EGF 250 281 - -
Viun2g00307 792 ProSiteProfiles Protein kinase domain profile. 475 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00307 792 SUPERFAMILY Protein kinase-like (PK-like) 458 773 IPR011009 -
Viun2g00307 792 ProSitePatterns Protein kinases ATP-binding region signature. 481 503 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00307 Viun-Chr2 6146251 6149081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00307 390 784 Receptor kinase-like Gene Family AT4G18250 36.098 2.04e-75 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Viun2g00307 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00307 - - gmx:100775518 1348.95