Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00305 ATGGGTTTTATTTCGTGGCTTGCTGTGTTGTTGTTCTGTGTGGGGTTTGAGTGTGCGTGGTGTCAAGATGATGCTGTGATGAACAAATTGAAGAAGGCCATCAATGAACCCAGTGGTCTTCAATGGAATGACCCAGATGTGTGTAAATGGAAACACGTCAAGTGCAGCGCCATGAAAAGGGTCACTGCAATTCAAATTGGGGGACAGAGTCTGCAAGGTTCTCTACCTAAGGAACTGGCGCAGCTCTCGGAGTTGACACGGTTTGAGTGCATGAACAATGAGTTAACTGGGCCATTTCCTAACATGCCGAAGTCCCTTGAGGTTCTGCTCATCCACCACAACAATTTCCAGTCCTTACCGGGTGATTTCTTCGCCGGCATGACCAATTTGCAGTATGTGAGCATTGGCTACAACCCTTTTTCCCCGTGGGGGATTCCTGATAACCTCAAGGACTGTGTGGCTCTCAGGAGTTTCTCTGCAACCAGTGCTGGTTTGGTGGGGAAAATCCCAGATTTTTTTGGTAAAGATGGTCCCTTCCCAGGTTTGGTTTCTCTTATCTTGAGTTTTAATTCTCTTGAAGGAGGGTTGCCTGCAACCTTTTCTGGCAGTTCTTTGGAGACACTTTGGGTGAATGGTCAGAAAAGTAATAGTAAACTCAATGGCACCCTTGATGTGTTAAAGGGCATGACATATTTGAAACAAATTTGGGTGCACGGTAACTCGTTCACAGGTCCTATACCGGACTTATCGCATCATGATCAACTATATGATGTTAGCTTGAGGGATAACCAGTTAACTGGGGTTGTTCCACCCTCTCTCACCGCTCTTCCTGCTCTTAAAGTAGTCAATTTGACCAATAACTTGCTTCAAGGGTCTCCTCCATTGTTCAAAGATGGAGTGAAGGTTGATAATGATTTAGACAAGGGGATCAATAGTTTTTGCACAGGGGAGGCTGGTAAGCCATGCAGTCCTCTTGTGGATGCTCTACTTTCTGCAGTTGAACCTTTTGGATACCCTGTGAGACTTGCTGAAAGTTGGAAGGGGAATGATCCCTGTGGTCAACATTGGTTGGGGATTGTTTGCTCAAATGGTAACGTTTCCGTGATCAACTTGCAGAGCATGAATCTCTCTGGCAACATTTCTCCCAGTTTTGCTGAGCTTACATCTGTGACAAAGCTGCTTCTTCCCAACAATGGCCTCACTGGTACCATACCAAGTGAACTCACCAGCATGCCTAGTCTGGTAGAATTGGATGTTTCCAATAACCAATTGCACGGCAAGGTGCCATCTTTTCGTGAGGGTGTAGTTGTGAAGACTGCAGGAAATCCTGACATTGGAAAGGATAAGCCTCAAGCCCCGCCTGGCTCAAGTCCTGGGGGTAAATCTGATGGTCAAGTTAAGAAAAATAATACTGCAGCAATTCTTGGCACTGTGTTGGGAGGTATCAGTTTAATCGGTTTGGTGGCTTTTATATTTCTTATGTATGGCAGAAAACGTAAGCAAGCAGGCAAAGTTCAAGGTCCTAGTGCAATAGTGGTACATCCTCGTTATTCTGGAGATGGAAGTACTTTGAAAATAAGTGTTGCAGATGCTAGTGCCGGTGTTAGTGGTGGTGGTGGTAGTCGAGGAGGAATCGGTGTAATTAGTCCAACTAGTACTGCTCAACATGTGGAAGCTGGGAATATGGTTATTTCAATCCAAGTTTTGAGACAAGTTACGAACAATTTCAGTGAGGCAAACATATTGGGGAAAGGTGGTTTTGGCACTGTATACAAAGGGGAGTTGTACGATGGAACAAAAATTGCAGTGAAAAGGATGGAATGTGGAATGATGGTTGAGAAGGGGCTGACTGAGTTTGAGTCTGAAATTGCAGTACTCACTAAGGTTAGACACAGACATCTGGTTGCACTTGAAGGCCACTGCTTGGATGGAAATGAGAAGCTTCTTGTGTATGAATACATGCCTCAGGGTCCTCTCAGTAAGCATCTATTTGACTGGAAAGAGCAAGGAATACAGCCATTGGAATGGAAGAGAAGGCTTTCCATTGCCTTGGATGTTGCCAGAGGTGTTGAATATCTTCACGGTTTGGCACAGCAAATTTTTATCCATAGGGATCTAAAACCATCAAACATCTTGCTCGGGGATGATATGCGGGCCAAAGTCTCAGACTTTGGATTGGTTCGGCTTGCTCCAGAAGGACAGACCTCGTTTGAAACCAGGCTTGCTGGAACTTTTGGATATTTGGCTCCAGAGTATGCAGTGACTGGACGAGTTACAACAAAGGTTGATGTTTACAGCTATGGAGTTATTCTGATGGAGATGATAACAGGAAGAAAAGCAATTGACAACAGCCAACCAGAAGAGAATGTGCACCTTGTTACATGGTTCAGGAGGATGCTACTGAACAAAGACTCTTTTGACAAGATTATTGACCCCATAATGTGCATTGATGAGGAGGCCTTACCCAGTTGTAGGACTGTGGCTGAGTTAGCTGGCCACTGTTGTGCAAGGGAGCCTCACCAGCGTCCAGACATGAGCCATGTGGTAAATGTTTTGGCCCCTCTTGTCGAAATTTGGAAGCCTTCTGAGACAGATGATGAAGACCTTTATGGAATTGACTTGGACATGACCTTGCCCCAAGCACTCAGAAAATGGCAAGCTTTTGAAGGAAGGAACACCTTTGATATCTCTTCATCAATGCTTAACAGTGAAGAAAATACACAGTCTAGCATACCAACAAGGCCATTTGGATTTGCTAATTCTTTTAATTCCTCTGATGGAAGATGA 2787 0.4474 MGFISWLAVLLFCVGFECAWCQDDAVMNKLKKAINEPSGLQWNDPDVCKWKHVKCSAMKRVTAIQIGGQSLQGSLPKELAQLSELTRFECMNNELTGPFPNMPKSLEVLLIHHNNFQSLPGDFFAGMTNLQYVSIGYNPFSPWGIPDNLKDCVALRSFSATSAGLVGKIPDFFGKDGPFPGLVSLILSFNSLEGGLPATFSGSSLETLWVNGQKSNSKLNGTLDVLKGMTYLKQIWVHGNSFTGPIPDLSHHDQLYDVSLRDNQLTGVVPPSLTALPALKVVNLTNNLLQGSPPLFKDGVKVDNDLDKGINSFCTGEAGKPCSPLVDALLSAVEPFGYPVRLAESWKGNDPCGQHWLGIVCSNGNVSVINLQSMNLSGNISPSFAELTSVTKLLLPNNGLTGTIPSELTSMPSLVELDVSNNQLHGKVPSFREGVVVKTAGNPDIGKDKPQAPPGSSPGGKSDGQVKKNNTAAILGTVLGGISLIGLVAFIFLMYGRKRKQAGKVQGPSAIVVHPRYSGDGSTLKISVADASAGVSGGGGSRGGIGVISPTSTAQHVEAGNMVISIQVLRQVTNNFSEANILGKGGFGTVYKGELYDGTKIAVKRMECGMMVEKGLTEFESEIAVLTKVRHRHLVALEGHCLDGNEKLLVYEYMPQGPLSKHLFDWKEQGIQPLEWKRRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQTSFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRKAIDNSQPEENVHLVTWFRRMLLNKDSFDKIIDPIMCIDEEALPSCRTVAELAGHCCAREPHQRPDMSHVVNVLAPLVEIWKPSETDDEDLYGIDLDMTLPQALRKWQAFEGRNTFDISSSMLNSEENTQSSIPTRPFGFANSFNSSDGR 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00305 928 CDD STKc_IRAK 582 855 - -
Viun2g00305 928 PANTHER OSJNBA0070M12.3 PROTEIN 10 928 - -
Viun2g00305 928 FunFam Receptor-like kinase TMK4 21 319 - -
Viun2g00305 928 FunFam Leucine-rich repeat receptor-like kinase 324 448 - -
Viun2g00305 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 701 713 IPR008271 GO:0004672|GO:0006468
Viun2g00305 928 ProSitePatterns Protein kinases ATP-binding region signature. 582 604 IPR017441 GO:0005524
Viun2g00305 928 MobiDBLite consensus disorder prediction 905 928 - -
Viun2g00305 928 Gene3D Ribonuclease Inhibitor 21 320 IPR032675 -
Viun2g00305 928 FunFam receptor protein kinase TMK1 543 653 - -
Viun2g00305 928 ProSiteProfiles Protein kinase domain profile. 576 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00305 928 Pfam Leucine rich repeat N-terminal domain 25 56 IPR013210 -
Viun2g00305 928 Pfam Leucine rich repeat N-terminal domain 327 362 IPR013210 -
Viun2g00305 928 SUPERFAMILY L domain-like 33 429 - -
Viun2g00305 928 FunFam receptor protein kinase TMK1 654 871 - -
Viun2g00305 928 Pfam Protein tyrosine and serine/threonine kinase 580 851 IPR001245 GO:0004672|GO:0006468
Viun2g00305 928 SMART LRR_typ_2 179 202 IPR003591 -
Viun2g00305 928 SMART LRR_typ_2 104 126 IPR003591 -
Viun2g00305 928 SMART LRR_typ_2 276 298 IPR003591 -
Viun2g00305 928 SMART LRR_typ_2 411 434 IPR003591 -
Viun2g00305 928 SMART serkin_6 576 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00305 928 Gene3D Transferase(Phosphotransferase) domain 1 654 871 - -
Viun2g00305 928 Gene3D Phosphorylase Kinase; domain 1 548 653 - -
Viun2g00305 928 MobiDBLite consensus disorder prediction 440 466 - -
Viun2g00305 928 Gene3D Ribonuclease Inhibitor 325 449 IPR032675 -
Viun2g00305 928 SUPERFAMILY Protein kinase-like (PK-like) 555 861 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00305 Viun-Chr2 6124586 6129394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00305 56 856 Receptor kinase-like Gene Family AT5G62230 28.095 2.13e-76 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Viun2g00305 PK_Tyr_Ser-Thr 5.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00305 K00924 - gmx:100776064 1536.93