Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00302 ATGACTTTTGGTTGGTGCTTCTCTGTGTGCATCTTATTTGTCTTGGTGGGTTTGAGATTAGAAGAAGCTAATGCTCAGTTTCTTAGAGAAGTTGGAACAAAAAAGTTAGCTTACTGGTCAATAGTGGTGGATCAATCAGGCCATGGAAACTTCACCACAATACAATCTGCCATTGATTCAGTCCCTTCTCAGAACATGTATTGGGTTTCCATCAAGGTGAAGGCTGGTATCTATAGAGAAAAAGTGAAGATTCCTTATGATAAGCCTTACATCATATTGAAAGGGGAGGGAAAGAGAAGAACTTTTGTTGAGTGGGATGACCATCATAATACCTCACAGAGTCCTACGTTTGTAGCCATGGCTGACAACCTTGTTGTCAAGTCCATCAGCTTTAGGAATTCATACAACAACCCAACAAATAGGAAACTCATTAAGCCTGCTGTGGCTGCAATGGTTAGTGGAGACAAGTCTTACTTTTTCAGAGTTGGTTTCTTCGGTTTGCAAGACACTTTATGGGACGACACAGGAAGACATTACTACAAGCTTTGCACCATTCAAGGTGCCATTGATTTTATTTTTGGTGCAGGCCAATCATTATTTGAGAGGTGTTCCATATCCGTGATAGGTGGGGCACTAGATGCTGGGTTACCGGGGTTCATCACAGCACAAGGGAGAACAAATTCAGAAGATGGAAATGGGTTTGTTTTCAATTATTGCCATGTGTTTGGAAATGGAACAACTTATTTGGGGAGACCATGGAGAAGTCATGCTAGGGTTTTGTTTTACAAGACCAACTTCTCCAACGTTGTACAACCTGCTGGGTGGGATGCATGGAGATATCATCCAAATGAGGGTAACATAACATTTGCAGAGTATGGGAATTTTGGGCCAGGTTCTGACACTTCTCAAAGAGTGAGTTGGATGAAGAAGTTGGATCTAGAAACAATTGAGAGTATGACAAGCACCAAGTTCATTGACACTGATGGCTGGCTTCAGAAACAACCATTCTAA 1011 0.4164 MTFGWCFSVCILFVLVGLRLEEANAQFLREVGTKKLAYWSIVVDQSGHGNFTTIQSAIDSVPSQNMYWVSIKVKAGIYREKVKIPYDKPYIILKGEGKRRTFVEWDDHHNTSQSPTFVAMADNLVVKSISFRNSYNNPTNRKLIKPAVAAMVSGDKSYFFRVGFFGLQDTLWDDTGRHYYKLCTIQGAIDFIFGAGQSLFERCSISVIGGALDAGLPGFITAQGRTNSEDGNGFVFNYCHVFGNGTTYLGRPWRSHARVLFYKTNFSNVVQPAGWDAWRYHPNEGNITFAEYGNFGPGSDTSQRVSWMKKLDLETIESMTSTKFIDTDGWLQKQPF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00302 336 SUPERFAMILY Pectin lyase-like 40 333 IPR011050 -
Viun2g00302 336 Gene3D - 38 336 IPR012334 -
Viun2g00302 336 Pfam Pectinesterase 41 327 IPR000070 GO:0030599|GO:0042545
Viun2g00302 336 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 40 332 - -
Viun2g00302 336 ProSitePatterns Pectinesterase signature 2. 185 194 IPR033131 -
Viun2g00302 336 FunFam Pectinesterase 35 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00302 Viun-Chr2 6051423 6054847 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00302 7 284 Carbohydrate Esterase AT2G19150 43.011 1.33e-75 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00302 - - gmx:100819252 535.028