Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00291 ATGATGATGATGATGATGACACCAAACTTGAACCTGGAACCTGAAGAAGATTTCAAAATCTGCAGCCAAGTTGGATCGAATGAACTGCTACAAGAAACAGCACAAGATTTCATGGACAACACCAGCTCCTCCTGTCTCACAAAGGCTGATCCTGATTCAGGTTCTCTGTCCCTTGACCTGACTCTCAAATTTAATCACAGTGATGAAGAGTTCAAAGGTGCAAGTTACACAAACAGTGAAGTGGGAGCTGAAACTCATCCCCCAGCTCTAGCAATTCCCAGAGTTTTCTCCTGTAACTATTGCCGGAGGAAATTCTTCAGCTCTCAGGCATTAGGTGGCCACCAGAATGCTCACAAAAGGGAGAGGACAATGGCAAAGCGTGCACTGAGAATGGGGATTCTCACTGATAGGTACACAAGCTTAGCATCTCTGCCTCTGCATGGTACTTCTTTTCGCTCCCTTGGCCTTGAAGCTCATGCTGCAATGCACCAAGCACAAATGCAGTCACTGAGGGTTCCTGAAATACTACCTGCTCCAAAATTCACTAAAGACTATTTTCGGACACCGATCTTCGTGGATGATGATGATGGTGGTGTGTTTTGGCCTGGCAGCTTCAGAAAGAGGGAAGGAAGGGGTGTTTTTGGTGTTAATCTGAGCCCTGATGCACATGCTTTCAATCCGAGTACTAGGTTTGTGGCAACTGCACCTCCACCACAGACACCTGCAACTCCTGATCTCACTCTCAGGCTCTGA 753 0.4688 MMMMMMTPNLNLEPEEDFKICSQVGSNELLQETAQDFMDNTSSSCLTKADPDSGSLSLDLTLKFNHSDEEFKGASYTNSEVGAETHPPALAIPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRALRMGILTDRYTSLASLPLHGTSFRSLGLEAHAAMHQAQMQSLRVPEILPAPKFTKDYFRTPIFVDDDDGGVFWPGSFRKREGRGVFGVNLSPDAHAFNPSTRFVATAPPPQTPATPDLTLRL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00291 250 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Viun2g00291 250 Gene3D Classic Zinc Finger 92 142 - -
Viun2g00291 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Viun2g00291 250 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 53 169 IPR044246 GO:0009788
Viun2g00291 250 SUPERFAMILY beta-beta-alpha zinc fingers 94 124 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00291 Viun-Chr2 5872318 5875262 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00291 94 207 C2H2 Transcription Factor Family AT1G66140 50.000 2.30e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun2g00291 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00291 - - gmx:100777133 313.153