Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00269 ATGACTGTGGATGAAGTGGATAGTAGCTCTGAGTGGAGCAGAGAGCAGGATAAAGCATTTGAAAATGCGTTGGCAACTCATCCGGAGGATGCTTCAGATCGATGGGAGAAGATAGCAGCTGACGTGCCGGGGAAGACTATAGAAGAAATCAAACAGCATTATGAACTCTTGGTTGAAGATGTTAGCCAGATTGAATCTGGTTGTGTGCCTTTACCATCTTATAATTCTTCTTCAGAGGGTTCAACAAGCCATGCTAGTGATGAAGGAGCTGGCAAAAAGGGCACCGGTGTTGGGAATTTTAACAGTGAGTCTAATCAAGGAACTAAGGCTTCAAGATCAGATCAAGAAAGACGGAAGGGGATTGCTTGGACGGAGGATGAACACAGGTTATTTCTTCTGGGCTTGGACAAGTATGGGAAAGGTGACTGGCGAAGCATATCAAGAAACTTTGTGGTGACAAGAACACCTACACAAGTTGCCAGCCATGCCCAAAAGTACTTCATTCGATTAAACTCCATGAACAAAGATAGAAGGCGATCCAGCATACATGATATCACCAGCGTTAACAATGGCGACGTGTTAGCTCCACAAGGACCAATCACCGGTCAGACTAATGGTTCTGCCACCAACTCTACTGTCAAAGCAACCAAACAAGCCACCCCGGCTTCAACCGCGGTGCCCGGAATTGGAATATATGCTGCTCCTACCATTGGACAACCTGTAGGAGGACCCTTAGTATCTGCAGTTGGCACCCCAGTGAACCTTCCTTCACCTGCACACATGGCATACGGTGTCAGGGCTCCGGTTGCCGGTGCAGTTGTACCTGGTGCACCGGTAAACGTGAATCCTGTGACATACCCTATGTCACATACATCTGCTCCTCACAGGTGA 891 0.477 MTVDEVDSSSEWSREQDKAFENALATHPEDASDRWEKIAADVPGKTIEEIKQHYELLVEDVSQIESGCVPLPSYNSSSEGSTSHASDEGAGKKGTGVGNFNSESNQGTKASRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVLAPQGPITGQTNGSATNSTVKATKQATPASTAVPGIGIYAAPTIGQPVGGPLVSAVGTPVNLPSPAHMAYGVRAPVAGAVVPGAPVNVNPVTYPMSHTSAPHR 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00269 296 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Viun2g00269 296 MobiDBLite consensus disorder prediction 1 37 - -
Viun2g00269 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Viun2g00269 296 FunFam transcription factor MYB1R1 121 172 - -
Viun2g00269 296 CDD SANT 11 58 IPR001005 -
Viun2g00269 296 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Viun2g00269 296 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Viun2g00269 296 SMART sant 8 60 IPR001005 -
Viun2g00269 296 SMART sant 119 169 IPR001005 -
Viun2g00269 296 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Viun2g00269 296 CDD SANT 122 167 IPR001005 -
Viun2g00269 296 PANTHER TRANSCRIPTION FACTOR KUA1 8 290 - -
Viun2g00269 296 MobiDBLite consensus disorder prediction 68 120 - -
Viun2g00269 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Viun2g00269 296 Gene3D - 5 71 - -
Viun2g00269 296 MobiDBLite consensus disorder prediction 68 85 - -
Viun2g00269 296 MobiDBLite consensus disorder prediction 8 37 - -
Viun2g00269 296 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Viun2g00269 296 Gene3D - 121 173 - -
Viun2g00269 296 FunFam Transcription factor SRM1 4 71 - -
Viun2g00269 296 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Viun2g00269 296 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00269 Viun-Chr2 5293728 5303002 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun2g00269 Myb_DNA-binding 7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00269 - - ccaj:109792793 527.324