Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00250 ATGAGTCCCGTTCCTCGAGAAGAACCAAGCTTAGATTTCAGACCCTCTTTTGTTCCTAAAATCGTCAATGAGTTTCTCTGCCATCTTTCCTCCACCCCAAATCCCTGCAACAGGATGTCCCTCCTCCAGGAATTTCTCACCAGATTGGAACTTGAATTGGTCAAGATTCAAGCCTTCAAACGCGAACTTCCTCTCTGCATGTTCCTCTTAAACGATGCAATTTCAGCTTTGAACGAAGAGTTAGCGAAAATCAGAACTTTCAAGTCTGAGCCTGTTTTGGAGGAGTTCATTCCTCTGAAGACTCTGAAGAGAGAGTACGAGGAGAAAGAGGATAGTGAGAAGGAAGAGAAATACAGGGACAAGAATGATTGGGTGAGTTCTTTCCAGCTTTGGAACACAGAAGATGAAGCTCATTGTAATAGGAACAATGCATATAGATCGGAGCAGAAACAAAAGAAGAGTAAGGAAGAAGAAAGACAATCCATGGAAAAGGACTATTTCCAACATGGTAGAAATAGAAATGTAGAGAGGGGATTTGCCATGCCTTTGTCCACTTATCTTTCAACAGAGGAAGAAGGTGTTGTGGATGGACTGTCTCTTAGGACACCTGCAACTGCAGTGAAAAACACAAGGGAGGGACGTGGTTCCAGAATCAGCTCTTGCAGGGTGGTTTCCTCCGCCACTTCGCCCCTGCTTCTGCCGCAAAGTGGCAGGAAACAAAGGAGGTGCTGGTCGCCGGAGTTGCATCACCGCTTTGTTAAGGCATTAGAAGAGCTTGGAGGCTCTCAAGCTACTCCAAAGCAAATTAGGGAACTCATGAGGGTTGATGGCCTGACCAACGATGAAGTAAAGAGTCATTTACAAAAATATAGACTTCATACAAGGAGAGCTCCAGCTGCTACAGCTGCAAATTCTAGCAACTCTGGTGCAGATCTTGGAGGCTTGTGGATGCACAAAGAAGCATTGAAGGGTACAAGTTCTTGTTCTCCTCAAGGGCCTCTCCAATTCGCTACACAATCTGGGGAAGCGACATCCACAACAGAAGATAAAATTAGAGGAGTTTCACATCTGCTCAAGAACAACACATGA 1089 0.4509 MSPVPREEPSLDFRPSFVPKIVNEFLCHLSSTPNPCNRMSLLQEFLTRLELELVKIQAFKRELPLCMFLLNDAISALNEELAKIRTFKSEPVLEEFIPLKTLKREYEEKEDSEKEEKYRDKNDWVSSFQLWNTEDEAHCNRNNAYRSEQKQKKSKEEERQSMEKDYFQHGRNRNVERGFAMPLSTYLSTEEEGVVDGLSLRTPATAVKNTREGRGSRISSCRVVSSATSPLLLPQSGRKQRRCWSPELHHRFVKALEELGGSQATPKQIRELMRVDGLTNDEVKSHLQKYRLHTRRAPAATAANSSNSGADLGGLWMHKEALKGTSSCSPQGPLQFATQSGEATSTTEDKIRGVSHLLKNNT 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00250 362 MobiDBLite consensus disorder prediction 324 362 - -
Viun2g00250 362 FunFam Two-component response regulator 235 297 - -
Viun2g00250 362 Coils Coil 99 119 - -
Viun2g00250 362 Coils Coil 145 165 - -
Viun2g00250 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 238 295 IPR017930 -
Viun2g00250 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 22 347 IPR044787 GO:0003700|GO:0006355
Viun2g00250 362 MobiDBLite consensus disorder prediction 141 171 - -
Viun2g00250 362 Pfam Myb-like DNA-binding domain 241 291 IPR001005 -
Viun2g00250 362 Gene3D - 236 297 - -
Viun2g00250 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 239 293 IPR006447 GO:0003677
Viun2g00250 362 SUPERFAMILY Homeodomain-like 237 296 IPR009057 -
Viun2g00250 362 MobiDBLite consensus disorder prediction 323 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00250 Viun-Chr2 4865167 4868128 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00250 8 320 G2-like Transcription Factor Family AT2G03500 38.643 1.61e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun2g00250 Myb_DNA-binding 3.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00250 - - vra:106776390 554.288