Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00249 ATGAGTCCCGTTCCTCGAGAAGAACCAAGCTTAGATTTCAGACCCTCTTTTGTTCCTAAAATCGTCAATGAGTTTCTCTGCCATCTTTCCTCCACCCCAAATCCCTGCAACAGGATGTCCCTCCTCCAGGAATTTCTCACCAGATTGGAACTTGAATTGGTCAAGATTCAAGCCTTCAAACGCGAACTTCCTCTCTGCATGTTCCTCTTAAACGATGCAATTTCAGCTTTGAACGAAGAGTTAGCGAAAATCAGAACTTTCAAGTCTGAGCCTGTTTTGGAGGAGTTCATTCCTCTGAAGACTCTGAAGAGAGAGTACGAGGAGAAAGAGGATAGTGAGAAGGAAGAGAAATACAGGGACAAGAATGATTGGGTGAGTTCTTTCCAGCTTTGGAACACAGAAGATGAAGCTCATTGTAATAGGAACAATGCATATAGATCGGAGCAGAAACAAAAGAAGAGTAAGGAAGAAGAAAGACAATCCATGGAAAAGGACTATTTCCAACATGGTAGAAATAGAAATGTAGAGAGGGGATTTGCCATGCCTTTGTCCACTTATCTTTCAACAGAGGAAGAAGGTGTTGTGGATGGACTGTCTCTTAGGACACCTGCAACTGCAGTGAAAAACACAAGGGAGGGACGTGGTTCCAGAATCAGCTCTTGCAGGGTGGTTTCCTCCGCCACTTCGCCCCTGCTTCTGCCGCAAAGTGGCAGGAAACAAAGGAGGTGCTGGTCGCCGGAGTTGCATCACCGCTTTGTTAAGGCATTAGAAGAGCTTGGAGGCTCTCAAGCAGCTACTCCAAAGCAAATTAGGGAACTCATGAGGGTTGATGGCCTGACCAACGATGAAGTAAAGAGTCATTTACAAAAATATAGACTTCATACAAGGAGAGCTCCAGCTGCTACAGCTGCAAATTCTAGCAACTCTGGTGCAGATCTTGGAGGCTTGTGGATGCACAAAGAAGCATTGAAGGGTACAAGTTCTTGTTCTCCTCAAGGGCCTCTCCAATTCGCTACACAATCTGGGGAAGCGACATCCACAACAGAAGATAAAATTAGAGGAGTTTCACATCTGCTCAAGAACAACACATGA 1092 0.4515 MSPVPREEPSLDFRPSFVPKIVNEFLCHLSSTPNPCNRMSLLQEFLTRLELELVKIQAFKRELPLCMFLLNDAISALNEELAKIRTFKSEPVLEEFIPLKTLKREYEEKEDSEKEEKYRDKNDWVSSFQLWNTEDEAHCNRNNAYRSEQKQKKSKEEERQSMEKDYFQHGRNRNVERGFAMPLSTYLSTEEEGVVDGLSLRTPATAVKNTREGRGSRISSCRVVSSATSPLLLPQSGRKQRRCWSPELHHRFVKALEELGGSQAATPKQIRELMRVDGLTNDEVKSHLQKYRLHTRRAPAATAANSSNSGADLGGLWMHKEALKGTSSCSPQGPLQFATQSGEATSTTEDKIRGVSHLLKNNT 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00249 363 FunFam Myb family transcription factor 238 296 - -
Viun2g00249 363 Coils Coil 99 119 - -
Viun2g00249 363 Gene3D - 238 296 - -
Viun2g00249 363 Pfam Myb-like DNA-binding domain 241 292 IPR001005 -
Viun2g00249 363 Coils Coil 145 165 - -
Viun2g00249 363 MobiDBLite consensus disorder prediction 324 363 - -
Viun2g00249 363 MobiDBLite consensus disorder prediction 141 171 - -
Viun2g00249 363 MobiDBLite consensus disorder prediction 325 363 - -
Viun2g00249 363 NCBIfam myb-like DNA-binding domain, SHAQKYF class 239 294 IPR006447 GO:0003677
Viun2g00249 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 238 296 IPR017930 -
Viun2g00249 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 22 348 IPR044787 GO:0003700|GO:0006355
Viun2g00249 363 SUPERFAMILY Homeodomain-like 237 297 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00249 Viun-Chr2 4865159 4868128 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00249 8 321 G2-like Transcription Factor Family AT2G03500 38.643 2.39e-56 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun2g00249 Myb_DNA-binding 4.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00249 - - vra:106776390 560.451