Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00247 ATGGATCGTTCTGCGATGACTGTTGGGCCAGGAATGGATATGCCAATCATGCATGACAGTGATAGGTATGAGCTGGTCCGTGATATTGGGTCGGGGAATTTTGGTGTGGCTAGGCTCATGAGGGACAAGCACACTGAGGAGCTTGTTGCTGTGAAGTATATTGAGAGAGGTGAAAAGATAGATGAAAATGTACGAAGGGAAATTATAAATCACAGATCATTGAGGCATCCCAATATTGTTAGGTTCAAGGAGGTCATACTAACACCTACACATTTGGCTATTGTGATGGAATATGCTTCTGGAGGAGAGTTATTTGAACGGATTTGCAAAGCAGGAAGATTTGGTGAAGATGAGGCACGGTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTTCTGTCATGCAATGCAAGTATGCCATCGTGACTTAAAGTTGGAGAACACATTGTTGGATGGCAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCGAAGTCCTCTGTACTACATTCACAACCAAAATCTACAGTCGGAACCCCTGCATACATTGCTCCTGAAGTTTTGCTTAAGAAAGAATATGATGGCAAGATTGCAGATGTGTGGTCCTGTGGGGTGACCTTATATGTCATGTTGGTAGGTGCATATCCTTTCGAGGATCCAGAGGAACCTGCAAATTTCCGAAAGACAATTCAGAGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTCCGGAATGCCGTCATCTAATCTCAAGGATCTTCGTCGCAGATCCTGCACAGAGAATAACTATGCCTGATATTCGAAGTCACGAGTGGTTTTTGACGAACCTTCCGGCAGATCTGATGGTGGACAACACAATGAGCAACCAATTTGAGGAGGCTCATCAACCAATGCAGAGCATTGAAGAGATCATGCAGATAATTAGAGAAGCTACAATTCCTGGAGCCAAAACTCAGTCTCTCAACCAGTATCTCACTGGTAGCTTGGACATGGATGATGATGACATGGACGAGGACCCAGAGACAGATTCTGATCTCGATATTGATAGCAGTGGAGAAATAGTTTATGCAATGTAA 1095 0.432 MDRSAMTVGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRDKHTEELVAVKYIERGEKIDENVRREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICKAGRFGEDEARFFFQQLISGVSFCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPANFRKTIQRILKVQYSIPDYVHISPECRHLISRIFVADPAQRITMPDIRSHEWFLTNLPADLMVDNTMSNQFEEAHQPMQSIEEIMQIIREATIPGAKTQSLNQYLTGSLDMDDDDMDEDPETDSDLDIDSSGEIVYAM 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00247 364 SUPERFAMILY Protein kinase-like (PK-like) 15 300 IPR011009 -
Viun2g00247 364 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Viun2g00247 364 Gene3D Transferase(Phosphotransferase) domain 1 99 286 - -
Viun2g00247 364 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00247 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Viun2g00247 364 MobiDBLite consensus disorder prediction 336 354 - -
Viun2g00247 364 MobiDBLite consensus disorder prediction 333 356 - -
Viun2g00247 364 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00247 364 FunFam Serine/threonine-protein kinase SRK2E 99 287 - -
Viun2g00247 364 PANTHER SERINE/THREONINE KINASE 22 308 - -
Viun2g00247 364 FunFam Serine/threonine-protein kinase SRK2E 14 98 - -
Viun2g00247 364 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00247 364 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00247 Viun-Chr2 4810952 4816012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00247 22 290 CBL-interacting serine-threonine protein kinases AT5G25110 44.326 5.13e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Viun2g00247 Pkinase 1.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00247 K14498 - gmx:100804702 672.93