Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00235 ATGGCTCACCATTGTTCAAACAAGGCTCTTCTTTTCGTTTTTCTTTCTCTTTTTTCAACCTTTTCAAGTGCTCATCTTCCTGAACTAATCCATTCTGAACCAATTGATCCAACCAATGTTGAAGATGATGCACTACTAGTCCCAGCCACAGCACCAGCACCAGCACCCGAAATAGAATTTGAAAACGATGAACCCCTTATTCCACCACCAACAAGAAAAACAAATGAAAGACTGAAGAAGGCCCATGTTGCTTTTCAGGCATGGAAGAAGGCCATTTATTCCGACCCTTTGAACATCACCGGCAACTGGGTAGGTGAAGATGTTTGCTCTTACAATGGTGTGTATTGTGCTCCTTCCCTTCATGATCCCACCCAGCTTGTGGTTGCTGGCATTGATCTGAACAATGCAGACATTGCTGGCAGCCTCCCAGAAGAGTTGGGACACTTGGAAGATATTGCACTTTTTCACATTAACTCCAACAGATTCTGCGGTGTGATCCCAGAGAACTTGCTCAATCTCACACTTGTGCATGAGTATGATATCAGCAACAATCGGTTTGTTGGTCGGTTTCCTTCTGTGGTTCTCACATGGCCAAACTTGAAGTACCTGGACCTCAGATTCAATGACTTTGAAGGACCCATACCCCCAGAGCTTTTTGAGAAGGATCTTGATGCAATCTTTTTGAACAACAACCGTTTCTCATCCGTCATCCCAGACACCATAGGAAAATCCAACGCCTCGGTCATCACCTTTGCCTACAACGATTTCAAAGGCTGCATCCCCAGCTCTTTCGGAAACATGAAGAACCTCAACGAGATTGTCTTCATAGGAAACAACCTGGGAGGATGCTTCCCGCAGGATGTTGGAAAGATGGAAAACCTCACGGTTTTGGATTTAAGCGGCAATGGGTTTGAAGGGACTCTTCCTAACTTGTCACAATTGAAGAAGGTTGAGGTGATAGACATTTCGCACAACAAGCTCAGTGGATATGTGTCTGACAGTGTGTGCCAACTTCCTTCCTTGAAGAACTTCACATTCTCTCACAACTACTTCAATGGAGAAGCTCCTAGCTGCGTGCCTTCACCCAATTCGGTGGTGGCTTTGGATGACTCACACAATTGTTTTACAGGAAAGAAGGATCAGAAGTCATCCAAGATGTGCTTGCCAGAGCTAACTCGCCCTGTGGATTGCAGCAAGCACTGTGGAGAAGCACCAAAGCCAACTCCATCTCCTAAACCCGAGACACCAAAGCTTGTACACTCTTCACCACCACCACCTCCTCCGGTTCACTCTCCTCCACCTCCCGTTTTCTCACCACCTCCACCGGTACACTCTCCACCACCTCCTCCCGTCTTCTCTCCCCCCCCACCACCTCCCGTTTTCTCACCACCTCCACCAGTTCACTCCCCACCACCTCCTGTTTTCTCACCACCTCCTCCAGTTCACTCCCCACCACCACCACCAGTCAACTCTCCACCTCCACCGGTTTATTCCCCACCACCACCACCACCACCAGTCAACTCTCCTCCACCACCAGTTTTCTCCCCTCCACCACCAGTTTTCTCACCACCACCACCAGTTCACTCTCCTCCTCCACCAGTTTCCTCTCCACCACCCCCAATTTTCTCCCCACCACCACCGGTGTACTCCCCACCACCACCCCCAGTTTCCTCCCCACCACCACCACCACCAGTGTACTCCCCACCTCCACCAGTTTCCTCTCCTCCTCCACCAGTGTACTCCCCACCACCACCAGTTTTCTCTCCTCCTCCTCCAGTCTTCTCCCCACCACCACCACCACCAGTGTACTCACCACCACCACCAGTGTACTCCCCACCACCACCACCAGTTTACTCTCCTCCTCCTCCAGTCTCCTCCCCACCACCACCAGTGTACTCTCCTCCACCACCACCAGTATGGGACGATGTTTTCCTTCCACCAATCTATGGCTCCTCATACAAGTCACCTCCTCCACCGGCAATTGTTGGATACAACTAA 1998 0.5025 MAHHCSNKALLFVFLSLFSTFSSAHLPELIHSEPIDPTNVEDDALLVPATAPAPAPEIEFENDEPLIPPPTRKTNERLKKAHVAFQAWKKAIYSDPLNITGNWVGEDVCSYNGVYCAPSLHDPTQLVVAGIDLNNADIAGSLPEELGHLEDIALFHINSNRFCGVIPENLLNLTLVHEYDISNNRFVGRFPSVVLTWPNLKYLDLRFNDFEGPIPPELFEKDLDAIFLNNNRFSSVIPDTIGKSNASVITFAYNDFKGCIPSSFGNMKNLNEIVFIGNNLGGCFPQDVGKMENLTVLDLSGNGFEGTLPNLSQLKKVEVIDISHNKLSGYVSDSVCQLPSLKNFTFSHNYFNGEAPSCVPSPNSVVALDDSHNCFTGKKDQKSSKMCLPELTRPVDCSKHCGEAPKPTPSPKPETPKLVHSSPPPPPPVHSPPPPVFSPPPPVHSPPPPPVFSPPPPPPVFSPPPPVHSPPPPVFSPPPPVHSPPPPPVNSPPPPVYSPPPPPPPVNSPPPPVFSPPPPVFSPPPPVHSPPPPVSSPPPPIFSPPPPVYSPPPPPVSSPPPPPPVYSPPPPVSSPPPPVYSPPPPVFSPPPPVFSPPPPPPVYSPPPPVYSPPPPPVYSPPPPVSSPPPPVYSPPPPPVWDDVFLPPIYGSSYKSPPPPAIVGYN 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00235 665 FunFam Leucine-rich repeat extensin-like protein 1 82 243 - -
Viun2g00235 665 PRINTS Proline rich extensin signature 468 489 - -
Viun2g00235 665 PRINTS Proline rich extensin signature 420 436 - -
Viun2g00235 665 PRINTS Proline rich extensin signature 403 415 - -
Viun2g00235 665 PRINTS Proline rich extensin signature 447 459 - -
Viun2g00235 665 ProSiteProfiles Leucine-rich repeat profile. 293 315 IPR001611 GO:0005515
Viun2g00235 665 MobiDBLite consensus disorder prediction 548 580 - -
Viun2g00235 665 SUPERFAMILY L domain-like 87 378 - -
Viun2g00235 665 MobiDBLite consensus disorder prediction 406 517 - -
Viun2g00235 665 Gene3D Ribonuclease Inhibitor 79 242 IPR032675 -
Viun2g00235 665 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 26 544 - -
Viun2g00235 665 MobiDBLite consensus disorder prediction 402 517 - -
Viun2g00235 665 Gene3D Ribonuclease Inhibitor 244 393 IPR032675 -
Viun2g00235 665 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 244 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00235 Viun-Chr2 4531038 4533215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00235 10 399 Trihelix Transcription Factor Family AT3G19020 58.312 2.04e-162 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00235 - - gsj:114419228 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00235 2 4531038 4533215 Viun2g00235 2 4531038 4533215 ECH