Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00233 ATGTATGAAGGGAATTCGTCCTTTATTGTTCATATTTTTAATTTGAGTACCTCTGAGATAAATTATCAATCGGCTATGAGAAACCATATGGAAGGACCCTGCTTTGTCAATTACAATCATATTTTCGAGGAAATGGAAGACATAGATTCCATTGATTTGTCAGATTTGTCACCTCCGTATCTTACATCTGGTGCCATGCAAAACAAGGGTTTTGCAGGATCTGTAGATCAACTGACACCTGGGAAGAGTCATACTCCGGCTCTGCAGAATTTGTTCAATGGTGGCTCAAAACTCAATCGCGTAAACTGGGGTGATGGTGGGAGTTCTTACTCTTCTAAGAGTGCCAATTCACTAGGTAGCCAGTCAACCAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACTGATGAATTGAAATTGCGTTATTCTAACGAGGAAGCACTTAATAAAACTGCAAAAAAGAAGCGGAAATCAGAGTCCCAGGGCGAGGAACCCTCAGGTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGGTTTTATGAAAGTGCATCTGCAAGGAAAAGAACAGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGCATCAAAAGCATTTGAACCCACAAATCCTTTCTGCAGAGTTGTCCTCCGACCCTCCTATTTATACAGAGGATGCATAATGTACTTGCCTTCGTGCTTTGCTGAGAAGAATCTGAATGGGGTATCAGGATTCATTAAACTTCAGTTGTCCAATGGAAGACAGTGGTCCGTTCGCTGTCTCTACAGAGGAGGTCGAGCTAAGTTAAGTCAGGGATGGTTTGAATTCACCGTGGAGAACAATCTCGGGGAGGGTGATGTCTGTGTGTTTGAGCTCCTAAGAACAAAGGAAGTTGTGCTGCAAGTTACCGTCTTTCGTGTAACTGAGGATGCAGGCTTGTTGAACTCTCCCCCTTCTGTGCAGCAGCTGAGCCAAAATATGAGCCACACCAAACTCTTGAACCCTCATTTGCAGCATCGCGTTAGCAGTACAGTGAAATTGATTAGAAATTAG 1062 0.4284 MYEGNSSFIVHIFNLSTSEINYQSAMRNHMEGPCFVNYNHIFEEMEDIDSIDLSDLSPPYLTSGAMQNKGFAGSVDQLTPGKSHTPALQNLFNGGSKLNRVNWGDGGSSYSSKSANSLGSQSTRDIGVQFNAVEFKRSTDELKLRYSNEEALNKTAKKKRKSESQGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVTVFRVTEDAGLLNSPPSVQQLSQNMSHTKLLNPHLQHRVSSTVKLIRN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00233 353 CDD B3_DNA 214 309 IPR003340 GO:0003677
Viun2g00233 353 ProSiteProfiles B3 DNA-binding domain profile. 216 311 IPR003340 GO:0003677
Viun2g00233 353 Pfam B3 DNA binding domain 219 309 IPR003340 GO:0003677
Viun2g00233 353 Gene3D - 193 313 IPR015300 -
Viun2g00233 353 SUPERFAMILY DNA-binding pseudobarrel domain 209 310 IPR015300 -
Viun2g00233 353 MobiDBLite consensus disorder prediction 152 178 - -
Viun2g00233 353 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 38 315 IPR044837 -
Viun2g00233 353 MobiDBLite consensus disorder prediction 152 168 - -
Viun2g00233 353 SMART B3_2 216 311 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00233 Viun-Chr2 4448512 4454096 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00233 2 315 B3 DNA Binding Superfamily AT3G18990 48.308 3.56e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun2g00233 B3 7.2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00233 - - gmx:100789352 597.816