Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00232 ATGGAAGGGCAGGATCTGCCCATTATTCACTTCATTGTTGAATTTTCCAATCTTATAAGGATTCCGGATATTTTTCTGAGGAAATATGGGACCCAGCTTTCTACAGTTGCTACCCTCACTGTTCCTGATGGTAGTATTTGGCGTATAGGATTGAAGAAAGCTGACAGCAAAATTTGGTTTGTTGATGGTTGGCAAGATTTTATCCAACGGTACTCCATTGGTGTTGGATACTTTTTGGTGTTCATGTATGAAGGGAATTCGTCCTTTATTGTTCATATTTTTAATTTGAGTACCTCTGAGATAAATTATCAATCGGCTATGAGAAACCATATGGAAGGACCCTGCTTTGTCAATTACAATCATATTTTCGAGGAAATGGAAGACATAGATTCCATTGATTTGTCAGATTTGTCACCTCCGTATCTTACATCTGGTGCCATGCAAAACAAGGGTTTTGCAGGATCTGTAGATCAACTGACACCTGGGAAGAGTCATACTCCGGCTCTGCAGAATTTGTTCAATGGTGGCTCAAAACTCAATCGCGTAAACTGGGGTGATGGTGGGAGTTCTTACTCTTCTAAGAGTGCCAATTCACTAGGTAGCCAGTCAACCAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACTGATGAATTGAAATTGCGTTATTCTAACGAGGAAGCACTTAATAAAACTGCAAAAAAGAAGCGGAAATCAGAGTCCCAGGGCGAGGAACCCTCAGGTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGGTTTTATGAAAGTGCATCTGCAAGGAAAAGAACAGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGCATCAAAAGCATTTGAACCCACAAATCCTTTCTGCAGAGTTGTCCTCCGACCCTCCTATTTATACAGAGGATGCATAATGTACTTGCCTTCGTGCTTTGCTGAGAAGAATCTGAATGGGGTATCAGGATTCATTAAACTTCAGTTGTCCAATGGAAGACAGTGGTCCGTTCGCTGTCTCTACAGAGGAGGTCGAGCTAAGTTAAGTCAGGGATGGTTTGAATTCACCGTGGAGAACAATCTCGGGGAGGGTGATGTCTGTGTGTTTGAGCTCCTAAGAACAAAGGAAGTTGTGCTGCAAGTTACCGTCTTTCGTGTAACTGAGGATGCAGGCTTGTTGAACTCTCCCCCTTCTGTGCAGCAGCTGAGCCAAAATATGAGCCACACCAAACTCTTGAACCCTCATTTGCAGCATCGCGTTAGCAGTACAGTGAAATTGATTAGAAATTAG 1305 0.4238 MEGQDLPIIHFIVEFSNLIRIPDIFLRKYGTQLSTVATLTVPDGSIWRIGLKKADSKIWFVDGWQDFIQRYSIGVGYFLVFMYEGNSSFIVHIFNLSTSEINYQSAMRNHMEGPCFVNYNHIFEEMEDIDSIDLSDLSPPYLTSGAMQNKGFAGSVDQLTPGKSHTPALQNLFNGGSKLNRVNWGDGGSSYSSKSANSLGSQSTRDIGVQFNAVEFKRSTDELKLRYSNEEALNKTAKKKRKSESQGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVTVFRVTEDAGLLNSPPSVQQLSQNMSHTKLLNPHLQHRVSSTVKLIRN 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00232 434 ProSiteProfiles B3 DNA-binding domain profile. 297 392 IPR003340 GO:0003677
Viun2g00232 434 CDD B3_DNA 13 95 IPR003340 GO:0003677
Viun2g00232 434 MobiDBLite consensus disorder prediction 233 259 - -
Viun2g00232 434 ProSiteProfiles B3 DNA-binding domain profile. 4 97 IPR003340 GO:0003677
Viun2g00232 434 MobiDBLite consensus disorder prediction 233 249 - -
Viun2g00232 434 PANTHER B3 DOMAIN-CONTAINING 15 386 - -
Viun2g00232 434 SUPERFAMILY DNA-binding pseudobarrel domain 290 391 IPR015300 -
Viun2g00232 434 CDD B3_DNA 295 390 IPR003340 GO:0003677
Viun2g00232 434 Gene3D - 9 98 IPR015300 -
Viun2g00232 434 Gene3D - 274 394 IPR015300 -
Viun2g00232 434 SMART B3_2 11 97 IPR003340 GO:0003677
Viun2g00232 434 SMART B3_2 297 392 IPR003340 GO:0003677
Viun2g00232 434 SUPERFAMILY DNA-binding pseudobarrel domain 14 96 IPR015300 -
Viun2g00232 434 Pfam B3 DNA binding domain 16 95 IPR003340 GO:0003677
Viun2g00232 434 Pfam B3 DNA binding domain 300 390 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00232 Viun-Chr2 4448512 4454098 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00232 7 396 B3 DNA Binding Superfamily AT3G18990 48.642 6.86e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun2g00232 B3 1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00232 - - gmx:100789352 713.761