Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00132 ATGGGACGTGGAAAGATTGAGATAAAGAGGATCGAGAACACCACCACAAGGCAAGTAACCTTTTCCAAAAGAAGAGGTGGCCTCATCAAGAAGACAAAGGAGCTTTCTGTGCTCTGTGATGCACAGATCGGGATCATCATCTTCTCCAGCACTGGGAAGATGTGGCAATGGTGCACTGAACCCTTCAGGATGGAGCAGATCATAGAGAAGTACCAGAGATCAACTGGAGCTCGCATTGCAGAACGTGACCATCCCCGTGAAGAATTTATCCATGACATGGCAATGCTGAGGCAAGAAACTCTCCGTCTTGAACTGGGAATTCAAAGGTATCTCGGTGAGGACATGGGGTGTTTGCAATATGAAGATTTGACTAAACTTGAACAAGAATTGGAGAATTCTGTGGCAAAGGTTCGAAATCGTCAGAATGAACTCTTGCAACAACAAATGGAGAATCTGAGAAGGAAGGAAAGGATGTTGGAAGAGGAAAACAATAATTTGTCCAATTGGGAACACAGAGCAGTGTTGGAGTTTGAGAAGGCTACAGTGGAAGCAAGCAAACCAATGCATATGAACATGATGGACGAGTTTCCATTCTTTGAAGAAGAACCTGCTGGTAGCATCCTTCAACTTGCTTCTCCTGTGCTTCCACACTTTCACCCTTATCTTCAGCTTGCACAACCCAATATCAAGCCTCAGTGA 699 0.4478 MGRGKIEIKRIENTTTRQVTFSKRRGGLIKKTKELSVLCDAQIGIIIFSSTGKMWQWCTEPFRMEQIIEKYQRSTGARIAERDHPREEFIHDMAMLRQETLRLELGIQRYLGEDMGCLQYEDLTKLEQELENSVAKVRNRQNELLQQQMENLRRKERMLEEENNNLSNWEHRAVLEFEKATVEASKPMHMNMMDEFPFFEEEPAGSILQLASPVLPHFHPYLQLAQPNIKPQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00132 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun2g00132 232 Pfam K-box region 85 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun2g00132 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun2g00132 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun2g00132 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun2g00132 232 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Viun2g00132 232 ProSiteProfiles K-box domain profile. 86 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun2g00132 232 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Viun2g00132 232 Coils Coil 120 172 - -
Viun2g00132 232 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Viun2g00132 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Viun2g00132 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun2g00132 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00132 Viun-Chr2 2948282 2953240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00132 1 230 MADS-box Gene Family AT5G23260 47.154 5.79e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun2g00132 K-box 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00132 - - gmx:100783876 341.658