Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00119 ATGGCTGGTAAAAGTTCAATTACTCAGCCAGCAACAAGACATGGCACCAGCAAACTGACCAAATATGATTTAGCTGATCTAGAATGGACCAATAGGATTCCAGAGTGTCCTACATACTACCCATCAGACCATGAGTTTGAGCATCCTTTAGTTTTTCTGCAGAAAATAGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTGCAGCCTCTAACCCAGCTGCTTTTGTTTTAATGAAAGAGAAAAAGGATTTCAAGTTTGAAACAAACTTACAGCCTCTTCGTCTGTCTAAATGGAAGGAGAAGGAAACGATAACCTTTTCTATGAGTGGCAGAAAATATACATATCATGAATTTGAGGCTCTTGCAAACAAGACATTTTTCAGTAGATTTCACTGTTCTGAAGGTCTTTCTTCTTCATGTGTGGAAAAGTTGTTCTGGCATGAGATGATGCATGGAGAGAAGGGAACAGTTGAGTATGGAGTCAATGTTGAAGGTAGTGCCTTTTCATGTGATCCTGATGACAGGCTTGGAACAAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCTGCAGTCACCCTTACGTTTAGTTGACAGGGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGAATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCATTATTTGTACAGCATAAATTATCATCACTCAGGTGCAAATAAAACCTGGTATGGAGTGCCTGGTTATGCAGCCTCTCATTTTGAAAAGACTGTCTTACAACAAGTGTACTGCAATAAGATCTTAACAAAACATGGAGAGCATGGAGCCTTCAAGTTTCTTGCACAAAAAACAACCATGTTCCCACCAAATGTTATGTTACAACATGATGTGGAAGTTTACAAGGCTGTACAGAAACCAGGAGAGTTTATCATCACCTTTCCAAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAATTTTGCCACCGATGATTGGTTTCCATTTGGGGCTGCAGCTAGCAGGCGTTATGCACTTCTCAGAATGATGCCTTTAATTCCATATGAGGAACTTCTTTGTAAAGAAGCAATGTTAGTTTACAAGTCTTCAAGAGTCAGAAGTTCCAAGAACAAGTTTGAAGACACAGCATCTTATAAAGCTATAGTGCAGCCTTTCTTGCATCTTATGCAATTTTATATGACATCCCTTTTGCGGCTGAAGAAGAGTTCAAGAAACTTGCGAAGTTATTCAAATACATCAGGTTTGCTGATATGCCGCATATGCCACAGGGATTGTTATGTAGCTTACCTGCTATGCAAGAACTGCTTTTCTCATCCAATTTGTCTTTTCCATGACATTGCACCAAATACTTGTGTATGTGGAAGGTATTATTCTATTTTCAAAAGAAATGACATTTTGGAACTGGAAGAAGCTGCCAAAAGTTTTCAACAGAATAATCCTTGGCAGCAAGAAAAGAGTGTGAGAGGAACTGCTAATTCTCCAGGTGCAGCATCTAAACCGAAAACACAAGTAGCTGACTGCATTAAGCACAGTGTTGAAAATAAGACAAAAATGCTGCATTGGACAAACAATGTGCTTCCATCTGAGAAGGGTACCAATAGGCCAGAAATAATTTATAACTTGAGAACGGAAATCAAATTGATCCTATAAATTCCTGCAACAACTTCTATGGGCAAAATCAAACAATTGAATCTGAAAAATTGA 1749 0.3859 MAGKSSITQPATRHGTSKLTKYDLADLEWTNRIPECPTYYPSDHEFEHPLVFLQKIAPEASKYGICKIVSPIAASNPAAFVLMKEKKDFKFETNLQPLRLSKWKEKETITFSMSGRKYTYHEFEALANKTFFSRFHCSEGLSSSCVEKLFWHEMMHGEKGTVEYGVNVEGSAFSCDPDDRLGTSKWNLKNFSRLLQSPLRLVDREIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPGYAASHFEKTVLQQVYCNKILTKHGEHGAFKFLAQKTTMFPPNVMLQHDVEVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFATDDWFPFGAAASRRYALLRMMPLIPYEELLCKEAMLVYKSSRVRSSKNKFEDTASYKAIVQPFLHLMQFYMTSLLRLKKSSRNLRSYSNTSGLLICRICHRDCYVAYLLCKNCFSHPICLFHDIAPNTCVCGRYYSIFKRNDILELEEAAKSFQQNNPWQQEKSVRGTANSPGAASKPKTQVADCIKHSVENKTKMLHWTNNVLPSEKGTNRPEIIYNLRKXEIKLILXIPATTSMGKIKQLNLKN 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00119 583 SUPERFAMILY Clavaminate synthase-like 190 370 - -
Viun2g00119 583 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Viun2g00119 583 Pfam JmjC domain, hydroxylase 213 336 IPR003347 -
Viun2g00119 583 Pfam C5HC2 zinc finger 433 485 IPR004198 -
Viun2g00119 583 PANTHER LYSINE-SPECIFIC DEMETHYLASE 28 518 - -
Viun2g00119 583 SMART JmjN_1 35 76 IPR003349 -
Viun2g00119 583 Gene3D Cupin 36 399 - -
Viun2g00119 583 ProSiteProfiles JmjC domain profile. 180 353 IPR003347 -
Viun2g00119 583 FunFam Lysine-specific demethylase isoform A 31 380 - -
Viun2g00119 583 Pfam jmjN domain 37 69 IPR003349 -
Viun2g00119 583 SMART cupin_9 180 353 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00119 Viun-Chr2 2709989 2713077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00119 5 491 JUMONJI Transcription Factor Family AT2G34880 30.357 1.25e-59 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun2g00119 JmjC 1.9e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00119 - - gmx:100809650 933.324