Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00115 ATGGGCTGTGAGGGTGAAGTTGCTAATGGCTCAACCCATAAAGAATCAGATGGTGGTGAATTATATCCTGTTTCTCAAGATCCTAATGAGGCTGCCACAGAGGAGTTGATTGAAAACATTGAAATGCAGCTTAGTGATTTTGTTGAGAGTTCTGAACCCGATGCAGGGGAGTCATCCAGATTACCACATAAAAGATTGAGCTGTCCTCCTGTTGTTCAGTGCTTTATTGATGCCATTAAGAAAAATCGGGATTTGCAGAGATTTCTTAGAGGTAAGTTAATTGAGCTTGAGGCTAAAATTGAGGAAAACAAAAAGATAAGGAATAGAATCAAAATTCTTAAGGACTTCCAGGCCTCGTGCAATAGAAGAACAGGGAATGTGTTATCACTGAAAAAAGATCCACGTGTTCAATTAATATCTGCAAAAAAGTCTTCTGCTTCAAAGAAATCTAAGAAAAAGAAAAAGGTACCTGCAATGTGTTATGGCCCAGAAGAAAATTCTCATGCTGCTAATTATAGGATGGTATTGGAAAGATTTCCACTTTCATTAGACCGGAAAAAATGGTCCAAGGTAGAAAGGGAAAACCTTTTGAAGGGAATTAAGCAACAGTTCCAAGAAATGGTGCTTCAACTTTCACTTTCAATTGATAGAACTAGTTCAGAGGAATTGCTTCGGGAGGCAGATGACATGGATAATATAATTGCATCTGTTAAAGATCTTGAAGTCACACCAGAGAGGATTAGAAAATTTTTACCTAAAGTTAATTGGGATCTGATATCTTCCATGTATGTTGGTGGCCGTACTGGCACTGAATGTGAGTCAAGGTGGTTGAATTATGAAGATCCTTTGATCAACCAAGGTGCATGGACTAAGGAAGAGGACAAGTCCCTTTTACTTATTGTACAAGATACAGGTATCAGGAATTGGTTCGAAATTGCTGCATCATTGGGCACAAGCAGGACTCCATTTCAATGCTTGTCACGATTCCAAAGGAGCTTAAATCCTTCCATGCTAAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTCTATTCTGCTGTGACATATTTTGGTGATGGCAATTGGCAGTATGTGGCTTCTGTTTTAGAGCGGCGGACAGGAACCCAATGCTCAAATAGATGGAAAAAATCCCTCTGTCCTGAGAAGAAAGGGAGCTTTACACAAGAGGAGGATATACGCTTAACAGTAGCAGTCATGCTTTTTGGACGGAAATGGAATCAAATAGCTAAATATGTTCCTGGCCGGATCCAATCTCAGTGTAGGGATAGATACCTCAATAGTCTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTTAAGACTAGAAGCTGCAATTGCCAAGCATGGATATTGTTGGTCTAAGATTGCTGAAGAAGTGCCTCCCCGTACTGATTCACAGTGCCGGAAGAGATGGAAGGTGTTATGTCCTGAACAAGTTCCTTTGCTTCAGGAAGCAAGAAAGAAGCAAAGGTCTATCATTAGTTGTAACTTCGTTGATCGAGAATCTGAACGGCCAACCATTACACTTGATGACTTTATGCCTTTAATTGCTTTAGCTCCAAAATCCGATATTGGTGCTTCAAAACTTCCCAAGAAGCGCAAGTCAAGCAATGTTTCCAAGAAAACAAGCTCTAAGAAACGTGCGAAAAGAACTCGACGTTGTGCCAAAGAAGTACAAGATACAGAAGTATACAACGATGATGAGTTCTACGCAGAATCTGAATGCAGCAATCTTCCCAAGAAGAACACGAGGTCCAAAAGGCATACAAAACGCAGTCAAAATTGTCCCCAGGAATTAGTGGATATATCTTGTAGTGACAAGGTCGAGATTTGCATTGAAGGTTCAGAAAACCAATCTACCTGTATTGCGAATTCTGAAAATGAAGATTGGGACAGCATAACACTTTCGTCTTTTATACGCAACAAATCAAATGAGATATTATCCAGATTTACCAAAAATTTGAGTCATACTTCTTTCTCCTCTAGGATTACAGATGTTCCTGAGCAGGCTGAAAGTCAAAACCCATCTGATGATCAAAGCGGCTTGTCTCAGTCATGTGATACTGTTGGAACTATAAATTTGTTTGTGCCGCCGAATACTGCTTCTGATAGACGAGTTAGAAACCGAGAGGATACAAATACTTTGGCTGGTGATGATGATGACGACCATATGACCCTTGCATCCTTTCTAGGAAACAAACCGAAGAAAGAGTGTCAACCTAAAGGACATCACTTATCCTCTTCCAAATTGAAAACAGGATCTGTATTACTAAATGAAGAACATTGTGCAGGCAAGCCAACCAACATATCTGATGACAGTGGGTCAATGTCCAAGCATGTTGAAGAGATGGAGACTGTTTTGCATGGTTGTGTTGATAAATCAATGGATATCATTGTGGAAGAAAAGGATGATGAGCTTTTTGCTTCCCCCGTGCAAAACCGGCCAAGGAGGGAGCGAAAACGGCCCAGTAGATTTTTGTAG 2514 0.4049 MGCEGEVANGSTHKESDGGELYPVSQDPNEAATEELIENIEMQLSDFVESSEPDAGESSRLPHKRLSCPPVVQCFIDAIKKNRDLQRFLRGKLIELEAKIEENKKIRNRIKILKDFQASCNRRTGNVLSLKKDPRVQLISAKKSSASKKSKKKKKVPAMCYGPEENSHAANYRMVLERFPLSLDRKKWSKVERENLLKGIKQQFQEMVLQLSLSIDRTSSEELLREADDMDNIIASVKDLEVTPERIRKFLPKVNWDLISSMYVGGRTGTECESRWLNYEDPLINQGAWTKEEDKSLLLIVQDTGIRNWFEIAASLGTSRTPFQCLSRFQRSLNPSMLNSEWTEEEDAQLYSAVTYFGDGNWQYVASVLERRTGTQCSNRWKKSLCPEKKGSFTQEEDIRLTVAVMLFGRKWNQIAKYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLRLEAAIAKHGYCWSKIAEEVPPRTDSQCRKRWKVLCPEQVPLLQEARKKQRSIISCNFVDRESERPTITLDDFMPLIALAPKSDIGASKLPKKRKSSNVSKKTSSKKRAKRTRRCAKEVQDTEVYNDDEFYAESECSNLPKKNTRSKRHTKRSQNCPQELVDISCSDKVEICIEGSENQSTCIANSENEDWDSITLSSFIRNKSNEILSRFTKNLSHTSFSSRITDVPEQAESQNPSDDQSGLSQSCDTVGTINLFVPPNTASDRRVRNREDTNTLAGDDDDDHMTLASFLGNKPKKECQPKGHHLSSSKLKTGSVLLNEEHCAGKPTNISDDSGSMSKHVEEMETVLHGCVDKSMDIIVEEKDDELFASPVQNRPRRERKRPSRFL 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00115 837 CDD SANT 444 485 IPR001005 -
Viun2g00115 837 ProSiteProfiles Myb-like domain profile. 334 385 IPR001005 -
Viun2g00115 837 Pfam Myb-like DNA-binding domain 390 433 IPR001005 -
Viun2g00115 837 Pfam Myb-like DNA-binding domain 443 484 IPR001005 -
Viun2g00115 837 Pfam Myb-like DNA-binding domain 185 279 IPR001005 -
Viun2g00115 837 MobiDBLite consensus disorder prediction 544 563 - -
Viun2g00115 837 SMART sant 338 387 IPR001005 -
Viun2g00115 837 SMART sant 184 282 IPR001005 -
Viun2g00115 837 SMART sant 440 488 IPR001005 -
Viun2g00115 837 SMART sant 389 437 IPR001005 -
Viun2g00115 837 SMART sant 285 335 IPR001005 -
Viun2g00115 837 MobiDBLite consensus disorder prediction 537 565 - -
Viun2g00115 837 CDD SANT 288 333 IPR001005 -
Viun2g00115 837 Gene3D - 184 282 - -
Viun2g00115 837 Gene3D - 340 388 - -
Viun2g00115 837 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 7 816 - -
Viun2g00115 837 MobiDBLite consensus disorder prediction 670 695 - -
Viun2g00115 837 Gene3D - 389 441 - -
Viun2g00115 837 SUPERFAMILY Homeodomain-like 415 487 IPR009057 -
Viun2g00115 837 MobiDBLite consensus disorder prediction 714 731 - -
Viun2g00115 837 Gene3D - 443 489 - -
Viun2g00115 837 ProSiteProfiles Myb-like domain profile. 436 486 IPR001005 -
Viun2g00115 837 ProSiteProfiles SANT domain profile. 444 487 IPR017884 -
Viun2g00115 837 MobiDBLite consensus disorder prediction 708 731 - -
Viun2g00115 837 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 281 333 IPR017930 -
Viun2g00115 837 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 390 435 IPR017930 -
Viun2g00115 837 MobiDBLite consensus disorder prediction 1 32 - -
Viun2g00115 837 SUPERFAMILY Homeodomain-like 263 330 IPR009057 -
Viun2g00115 837 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 334 389 IPR017930 -
Viun2g00115 837 Pfam Myb-like DNA-binding domain 289 350 - -
Viun2g00115 837 ProSiteProfiles Myb-like domain profile. 180 280 IPR001005 -
Viun2g00115 837 ProSiteProfiles Myb-like domain profile. 281 333 IPR001005 -
Viun2g00115 837 Gene3D - 283 333 - -
Viun2g00115 837 CDD SANT 243 279 IPR001005 -
Viun2g00115 837 SUPERFAMILY Homeodomain-like 337 431 IPR009057 -
Viun2g00115 837 ProSiteProfiles Myb-like domain profile. 389 435 IPR001005 -
Viun2g00115 837 CDD SANT 392 435 IPR001005 -
Viun2g00115 837 CDD SANT 341 385 IPR001005 -
Viun2g00115 837 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 436 490 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00115 Viun-Chr2 2572890 2580124 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00115 57 579 MYB-Related Transcription Factor Family AT3G18100 49.257 1.27e-170 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun2g00115 Myb_DNA-binding 1.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00115 K09422 - gmx:778073 1164.44