Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00107 ATGTATCCCAAAGATCCAGAATTCCCACCTGCTGGTGTGGACGATATGACAAGACTGGCATATCTGCATGAACCAGGAGTTCTTCAGAATTTGCATATTCGATATTCCATAAATGAGATTTATACATACACGGGAAATATATTGATAGCTGTGAACCCTTTTCAAAGGTTACCTCATTTGACTGAAACTAGTACCATGGCAAAGTATAAAGCTGCGGCTTTTGGTGAGCAGAGCCCGCATCCTTTTGCAATTGCAAGTTCTGCATATAGAAAGATGATAAACGAAGAAAAAAGCCAATCTATTTTGGTTAGTGGAGAAAGTGGAGCTGGCAAGACAGAGAGTACAAAGATGCTTATGCATTATCTTGCTTTTTTGGGAGGGAGAGCAGCAACTGAAGGAAGGTCTGTGGAGCAACAAGTTCTCGAGTCCAATCCAGTTTTAGAAGCATTTGGCAATGCAAAGACAGTTAGGAATAATAATTCTAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACATATTTGCTGGAACGATCCCGTGTTTGTCAAGTTTCTGATCCTGAGAGAAACTATCATTGCTTTTATATGTTGTGTGCTGCACCAAAAGAGGAATCTGGTAAATACAAAGTGGGAGATCCAAGAAAATTCCATTACCTTAATCAATCAAATTGCATTGAGCTGGATGGGTTGGATGATTCTAAGGAGTACCTTGCAACTAAGAGAGCTATGGAGGTTGTTGGGATCAGCGCAGATGAGCAGGATGCTATATTTCGAATAGTAGCTGCAGTACTTCATTTAGGAAACATTGAGTTTATTAAGGGAGCGGAAGATGAGTTGGATTCCTCACAGCCCAAGGATGAAAAATCCATTTATCACCTAAAAACAGCAGCAGAGCTTTTGATGTGTGATGTGAAGTCCCTTGAAGACTCTTTCTGCAAACGTGTTATGGTGACTCGTGGTGACACCATAACAAAATCACTTGATCCAAATTCTGCAGCCCTCAGCAGAGATGCATTGGCTAAAATAGTTTATTCAAGGCTTTTTGACTGGATTGTGTGCAAGATCAACAACACTATTGGGCAAGATCCAGATTCAAATAAATTGATTGGAGTTCTAGATATATATGGATTTGAGAGTTTCAAAACCAACAGCTTTGAGCAATTTTGTATCAATTTGACAAATGAGAAATTACAGCAGCATTTCAACCAGCACGTTTTCAAAATGGAGCAAGAGGAATATACAAAGGAAGAGATTAATTGGAGTTATATTGAGTTCGTTGATAACCAAGATGTTCTTGATCTCATAGAGAAGAAACCTGGTGGTGTTATTGCTCTCCTGGATGAGGCCTGTATGTTTCCAAGATCAACGCATGAAACATTTGCTGAAAAGCTATACCAAACCTTTAAAGACAACAAACGCTTCAGCAAGCCAAAGTTGTCTCGCACAGACTTTACCATTAACCACTATGCCGGTGATGTCACCTATCAAACTGATTTTTTCCTTGATAAAAATAAAGACTACGTTGTTCCAGAGCATGCTGCTCTACTCAGTGCTTCGAAGTGCTCCTTTGTTTCAGGGTTGTTCCCTCCTTTACCCGAGGAAACTACAAAATCGACAAAGTTTTCTTCTATAGCCACTCAGTTTAAGCTACAACTTCAATCTTTGCTCGAAACACTAAACGCTACCGAGCCTCACTATATTCGTTGTGTAAAGCCAAATAATCTTCTGAAGCCTGGAATATTCGAGAACAATAATGTGTTGCAGCAGCTTCGATGTGGAGGAGTAATGGAGGCAATTCGGATCAGTTGTGCTGGATATCCCACCAGAAAAACCTTTGATGAATTTGTTCAGCGGTTTACCATCCTGGAACCTTCGGTTCTGAAAGCATGCCCTGATGAGATGACGGCTTGCAAGAGGCTTCTAGATAGAGCGAACCTTAAAGACTATCAGGTTGGAAAGACAAAAGTGTTTCTGAGAGCAGGTCAAATGGCAGAACTAGATGCATGTCGTGCTGAGGTCCTTGGATTGTCTGCAAGTGTTATTCAGAGAAGAGCCCGCACGTATATCTGTCGGAAACAATACGTCTTATTACAGTTGTCGGCCGTAGAACTTCAAAGGGTTGCGAAAGGACAACTTGCACGACGTCGGTATGAATGCATGAGGAGGGAAGCCGCTTCTATAAAACTTCAGAAAGATTTCCGCATGTATGTTTCCAGAAAGGCTTACACAACTAAATATGCCTCGTCTATTTGTATTCAAACTGGTATGCGAGGGATGGCTGCTAGAAATGATCTTAGATTCAGGAGACGGACAAAAGCTGCAATTATTATTCAGGCTCGGCAAAGATGTCATTCAGCTCGTACTTATCACCTGAAGCTAAAGAAAGCAGCAATTTTTGCACAGTGTTCGTGGAGGAGAACAATAGCACGGAGAGAACTTCGAAAGCTTAAAATGGCTGCCAGGGAACAAAAAGCACTTGAAGAGGCAAAAAGTAATCTGGAAAAGCAAGTCAAAGAACTAATTTCATCTCTAGAAGAAGAAAAGGCGATGAGGACACAGGAAGCTGAAAAACTACAAAATGCTTTGAAAGAGATGGAGCTTCAGTTCCAAGAAATTCAGGAAGCCAAGACACAAGAAACTGAAAAACTACAAGATGCTTTGAAAGAGATGGAGGCAGCGCTCATTCAGGAACAAGAAGCTGCCAAGAAATTAGCTGAGCAGACCCCAAGTATGCAGGAGAAATCTGTTAATGATGTTGACCATGAATTGATCAGTAAGCTTACAGCAGAAAATGGACAACTCAAGGGTCAGGTTAATTCATTGGAAATAAAAATTGATGAAACAGAGAGGAAATATGAAGAATGTAACAGGATTAGTGAGGAGCGCATGAGTCAAATTATAGAGACAGAATCAAAGATGATTGAGATAAAGACAAATATGCAGAGGCTTGAAGAAAAAGTATCCGATATGGAAACTGAGAATCAAGTTTTGCGGCAGCAAACCTTGTTGAGTTCATCATCATCCAGAAGAATGTCAGGAAAGTTTTCCCCTGCTACAGTTCCGCCTGTGGAAAATGGACAGGCACAACAGACTGCTGCTCCTGCAAAAACATTCGGTACAGAGGATAGTAAAGTAAGGAGGTCTCTTATGGAGAGACATCAAGAGAGCATAGATGTTCTTTTCAAATGCGTGACAAAAGATCTCGGGTTCTGTGAAGGGAAACCTGTTGCAGCATTTACCCTTTACAATTGTCTGCTACATTGGAAATCTTTTGAAGCAGAAAAAACAAGCATATTTGATCGTCTTATTCAGATTATTGGTTCTGAAATAGAGGATCCAGACAAAAATGATTCTATGGCTTATTGGCTATCCAACACAGCTTCTTTGTTTTTCCATCTTCATCGATGTTTAAGAGTACCTACAGCGCGGAAACCACCCACTCCGACATCATTTTTTGGGAGAATGGCCCAGGGTTTTCGCTCATCTAATAGTCTTTCCAGCAGTGCTTTTGATGTAGTGCATCAGGTTGATGCCAAGTATCCAGCTTTGCTTTTCAAGCAACAGCTTGCAGCTTACGTGGAAAAGATTTATGGAATCGTTCGAGAAAATTTCAAGACAGATTTGACACCTCTGCTTTCTTCTTGCATTAAGGCAGATAGAGAATCAAATGACACCAGCCAACAAGCTGGTTCTTGGGTCAGCATTATGGAGTGCCTTAATAAATATCTCAAGATTATGAAAGAAAACTATGTGCCTAATGTTCTAGTTCACAAGCTATTTAATCAAATTTTTCAATACATCAATGTGGAACTCTTTAATAGCCTTCTTTTGCAAGGAGAGTGCTGCACATTCAAGCATGGAGAATATATAAAATCAGGTTTGGCTGAACTAGAAGGATGGTGTAATGAAGCAACGGAAGAGTACATTGGCTCATCTTTGGATGAACTCAAACATGCAACACAAGCAGTTAAATTCTTGGTTGCAGAAAAGAAGGAAGAGCTATCTTATGATGATCTTACAAACGACCTATGCCCTGTCCTGAGTGCTCAACAACTTCATAGAATATGTACACTTTACTCTGATGATGATGATGACAAAAAACAAAGTGTATCAACAGATGTCACCACTAGATTGAAGCTTCTTATGTCAGATGATGCAGATGAAGATAGTAAAACCTACTTGTTGGAGGACAACACAAGCCATCCTATCATAGTTGAAGAGATCCCTTCTTCTCAAGATAAGAGCCCTCCAAAAGTAAAACCTCCTGCAGAACTTCTTGAGAATGCAAACTTCCAATTTCTGCATGACTATTATTAG 4353 0.4027 MYPKDPEFPPAGVDDMTRLAYLHEPGVLQNLHIRYSINEIYTYTGNILIAVNPFQRLPHLTETSTMAKYKAAAFGEQSPHPFAIASSAYRKMINEEKSQSILVSGESGAGKTESTKMLMHYLAFLGGRAATEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPKEESGKYKVGDPRKFHYLNQSNCIELDGLDDSKEYLATKRAMEVVGISADEQDAIFRIVAAVLHLGNIEFIKGAEDELDSSQPKDEKSIYHLKTAAELLMCDVKSLEDSFCKRVMVTRGDTITKSLDPNSAALSRDALAKIVYSRLFDWIVCKINNTIGQDPDSNKLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAEKLYQTFKDNKRFSKPKLSRTDFTINHYAGDVTYQTDFFLDKNKDYVVPEHAALLSASKCSFVSGLFPPLPEETTKSTKFSSIATQFKLQLQSLLETLNATEPHYIRCVKPNNLLKPGIFENNNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFVQRFTILEPSVLKACPDEMTACKRLLDRANLKDYQVGKTKVFLRAGQMAELDACRAEVLGLSASVIQRRARTYICRKQYVLLQLSAVELQRVAKGQLARRRYECMRREAASIKLQKDFRMYVSRKAYTTKYASSICIQTGMRGMAARNDLRFRRRTKAAIIIQARQRCHSARTYHLKLKKAAIFAQCSWRRTIARRELRKLKMAAREQKALEEAKSNLEKQVKELISSLEEEKAMRTQEAEKLQNALKEMELQFQEIQEAKTQETEKLQDALKEMEAALIQEQEAAKKLAEQTPSMQEKSVNDVDHELISKLTAENGQLKGQVNSLEIKIDETERKYEECNRISEERMSQIIETESKMIEIKTNMQRLEEKVSDMETENQVLRQQTLLSSSSSRRMSGKFSPATVPPVENGQAQQTAAPAKTFGTEDSKVRRSLMERHQESIDVLFKCVTKDLGFCEGKPVAAFTLYNCLLHWKSFEAEKTSIFDRLIQIIGSEIEDPDKNDSMAYWLSNTASLFFHLHRCLRVPTARKPPTPTSFFGRMAQGFRSSNSLSSSAFDVVHQVDAKYPALLFKQQLAAYVEKIYGIVRENFKTDLTPLLSSCIKADRESNDTSQQAGSWVSIMECLNKYLKIMKENYVPNVLVHKLFNQIFQYINVELFNSLLLQGECCTFKHGEYIKSGLAELEGWCNEATEEYIGSSLDELKHATQAVKFLVAEKKEELSYDDLTNDLCPVLSAQQLHRICTLYSDDDDDKKQSVSTDVTTRLKLLMSDDADEDSKTYLLEDNTSHPIIVEEIPSSQDKSPPKVKPPAELLENANFQFLHDYY 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00107 1450 Pfam IQ calmodulin-binding motif 689 706 IPR000048 GO:0005515
Viun2g00107 1450 Pfam IQ calmodulin-binding motif 712 729 IPR000048 GO:0005515
Viun2g00107 1450 Pfam IQ calmodulin-binding motif 736 754 IPR000048 GO:0005515
Viun2g00107 1450 Pfam IQ calmodulin-binding motif 783 802 IPR000048 GO:0005515
Viun2g00107 1450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 737 833 IPR027417 -
Viun2g00107 1450 PANTHER MYOSIN 3 1384 - -
Viun2g00107 1450 SMART iq_5 685 707 IPR000048 GO:0005515
Viun2g00107 1450 SMART iq_5 733 755 IPR000048 GO:0005515
Viun2g00107 1450 SMART iq_5 708 730 IPR000048 GO:0005515
Viun2g00107 1450 SMART iq_5 804 826 IPR000048 GO:0005515
Viun2g00107 1450 SMART iq_5 756 778 IPR000048 GO:0005515
Viun2g00107 1450 SMART iq_5 781 803 IPR000048 GO:0005515
Viun2g00107 1450 Gene3D Kinesin motor domain 14 613 IPR036961 -
Viun2g00107 1450 Gene3D - 736 783 - -
Viun2g00107 1450 Gene3D - 784 837 - -
Viun2g00107 1450 Gene3D - 688 735 - -
Viun2g00107 1450 SMART MYSc_2a 5 684 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun2g00107 1450 FunFam Myosin heavy chain 201 256 - -
Viun2g00107 1450 Gene3D - 618 681 - -
Viun2g00107 1450 ProSiteProfiles Dilute domain profile. 1112 1396 IPR002710 -
Viun2g00107 1450 FunFam unconventional myosin-Va 736 784 - -
Viun2g00107 1450 Gene3D Myosin VI head, motor domain, U50 subdomain 261 552 - -
Viun2g00107 1450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 737 IPR027417 -
Viun2g00107 1450 FunFam unconventional myosin-Va 785 832 - -
Viun2g00107 1450 PRINTS Myosin heavy chain signature 145 172 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun2g00107 1450 PRINTS Myosin heavy chain signature 98 123 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun2g00107 1450 PRINTS Myosin heavy chain signature 380 408 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun2g00107 1450 PRINTS Myosin heavy chain signature 433 461 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun2g00107 1450 PRINTS Myosin heavy chain signature 41 60 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun2g00107 1450 ProSiteProfiles IQ motif profile. 782 808 IPR000048 GO:0005515
Viun2g00107 1450 CDD MYSc_Myo11 25 671 IPR036018 -
Viun2g00107 1450 Pfam DIL domain 1271 1374 IPR002710 -
Viun2g00107 1450 ProSiteProfiles Myosin motor domain profile. 11 683 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun2g00107 1450 ProSiteProfiles IQ motif profile. 734 761 IPR000048 GO:0005515
Viun2g00107 1450 Gene3D - 201 259 - -
Viun2g00107 1450 FunFam Myosin 2 261 377 - -
Viun2g00107 1450 SMART DIL_2 1270 1377 IPR002710 -
Viun2g00107 1450 CDD MyosinXI_CBD 1063 1418 IPR037975 GO:0007015
Viun2g00107 1450 ProSiteProfiles IQ motif profile. 757 786 IPR000048 GO:0005515
Viun2g00107 1450 Gene3D - 390 574 - -
Viun2g00107 1450 MobiDBLite consensus disorder prediction 1034 1049 - -
Viun2g00107 1450 MobiDBLite consensus disorder prediction 1013 1049 - -
Viun2g00107 1450 Coils Coil 978 1012 - -
Viun2g00107 1450 ProSiteProfiles IQ motif profile. 805 834 IPR000048 GO:0005515
Viun2g00107 1450 ProSiteProfiles IQ motif profile. 709 738 IPR000048 GO:0005515
Viun2g00107 1450 Pfam Myosin head (motor domain) 13 671 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun2g00107 1450 FunFam Class V myosin 390 531 - -
Viun2g00107 1450 Coils Coil 821 919 - -
Viun2g00107 1450 Coils Coil 936 970 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00107 Viun-Chr2 2344633 2357616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00107 2 1447 Myosins gene family AT5G43900 62.905 0.0 1867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00107 K10357 - mnt:21394610 1975.29