Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00090 ATGGAGAATAATTCAGATCTTGAAGCTGGCGCTGCTGCTGTGTTACTTCTCCAAATTGGCAAGAGAGAGGGAGAGATTGAAGATGAGCCACAAGAGAGTGCAAAGAAGCAAAAGACAGATGAGGTTGCTGAGGAGCAAAGGAATAAGGACGAAATTGTTTCAGACAATTCCTTTTCAGATTCTGATCCAGATATGGGGCATATGGATATTCACGATGGTTATAATTCTGAAGAAAGTGATGAAGCAACACAGGAAGAGATGGATGCTTTGCCCGTAATGAGTTCAGAGAATAGTGTGGAAGGAATTGAAGAAGAAGACTCTAAAACGCCTCGAGATGCTAGAATGCTATCTACAATGAATGAACAATATGCTGGATCAAGGACTATATGTACTAAAAACTTGTCATACAGTGTGGAACGCACTGATTTGGAAGATCTTTTCAAAGATTGTGGAGAAATTGTTGATATTCGTCTACACTTAGACAGTGAAGGGAGGTTCAGAGGCTTTGGACATATTGAGTTTGCATCGGCAGAAGCAGCACAAAAAGCTCTTCGGTTAAATTATACAGAACTGTTGAGATGCCGAATGAGAATTCGTTTGGCTCCACAAAGGCATAAGTATACTTCCAATAGAAGTTTACATGTTAATCCTAGCAACTCAATTATTCAAAGGACTGAAAAAACGCAGCCAATGAAAGGTTCAGAGCCTTCATTGGACTATGAACAAGAAGCTCAGCAGTCAAAAATGCACTCTACCTTGGAAGCACAGAAGGCTACGTCAGAGACAATATATGTTGCAAACTTGTCATACAGTGCGGAGCAGACTGATATGGAGTTCCTTTTCAAGGAGTGTGGAGAAATTGTCGATATTCGCCTACATACCGATGATAAAGGGCTGTTTAAGGGATATGCACATGTTAAGTTCGCAACTGCAGAAGCTGCACAAAAAGCTGTTGAATTGAATGGTACAATACATTTGGGACGTTGCCTTAGAGTTGAAATAGCCCATGAAAAGGGTGAATATGGCTCCAACAAAAGCAACTGGAGCAAGTCTATCCTAAAGAGTGAAATAAGTCAGTCCACCGAAAGTTCAAAGAGTTTACAGCACCATGACGAAGAGATTGAGGGAAAAGCCTCCGGATTTCCTTGCGAAAGTTCTACAAGGCTACCTACTTTGGAAGAACAAAATGGTCCATCAAAGACAATAAATGTCAGAAACTTGTCATACAGTGTGGAACGGGCTGATATGGTGTACTTTTTCGGAAAATGTGGAAAAATTGTTGATGTTCGTCTGCATATGGATCACAAAGGGAGGTTTAATGGCTTTGGGCAAGTTAAGTTTGCTACTGCTGAAGCTGCAATAAAAGCTGTTGAGTTAGATAATACAGAATTGTTGCAACGTCACATTCGAGTTGATTTGGCCGAAGAAAAAGGTCAACATGCCCATAATCGAAGCAACTGGAGCAGCATGTTTCAGAATTGTGAAAGAGATCAGTCTCCAATTATATATGTGAGGGGTTTCAATCGTTCCCTTCCAGTAGAAGAGATAAAAGCTAGCCTAGAGAAGCATTTTGGTTCTTGTGGAGAGATTGTAAGGATATCAATTCCAAAATGTCGTGAGTCTGGTGATGTTAAGGGGTTTGCTCACTTGGAGTTCAACCATGTTGCTTGTGTGAATAAAGCTCTACATCTTGATGAGAGTGAGTTTGGAGGTTATCGCTTGACAGTTGAAAAGGAAAAGCCTCGGCGTGAGAACCGAGGTATACGCGGTGGAAGAGGTGGAAGAGGAGGTGGTCGTCGTGAATTTGGTGGAAGAGATGGCAGTGGTTATAGCAGCAAAGTTGATTGGGGGAGAAGTAGTGGTCGTGGGTGGCATTCTCTTCATTTTTCTGATGAAAGCACGGGGAGGAAAAACCAATTTCAGTGA 1926 0.4164 MENNSDLEAGAAAVLLLQIGKREGEIEDEPQESAKKQKTDEVAEEQRNKDEIVSDNSFSDSDPDMGHMDIHDGYNSEESDEATQEEMDALPVMSSENSVEGIEEEDSKTPRDARMLSTMNEQYAGSRTICTKNLSYSVERTDLEDLFKDCGEIVDIRLHLDSEGRFRGFGHIEFASAEAAQKALRLNYTELLRCRMRIRLAPQRHKYTSNRSLHVNPSNSIIQRTEKTQPMKGSEPSLDYEQEAQQSKMHSTLEAQKATSETIYVANLSYSAEQTDMEFLFKECGEIVDIRLHTDDKGLFKGYAHVKFATAEAAQKAVELNGTIHLGRCLRVEIAHEKGEYGSNKSNWSKSILKSEISQSTESSKSLQHHDEEIEGKASGFPCESSTRLPTLEEQNGPSKTINVRNLSYSVERADMVYFFGKCGKIVDVRLHMDHKGRFNGFGQVKFATAEAAIKAVELDNTELLQRHIRVDLAEEKGQHAHNRSNWSSMFQNCERDQSPIIYVRGFNRSLPVEEIKASLEKHFGSCGEIVRISIPKCRESGDVKGFAHLEFNHVACVNKALHLDESEFGGYRLTVEKEKPRRENRGIRGGRGGRGGGRREFGGRDGSGYSSKVDWGRSSGRGWHSLHFSDESTGRKNQFQ 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00090 641 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 500 581 IPR000504 GO:0003723
Viun2g00090 641 SUPERFAMILY RNA-binding domain, RBD 256 344 IPR035979 GO:0003676
Viun2g00090 641 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 337 IPR000504 GO:0003723
Viun2g00090 641 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 400 476 IPR000504 GO:0003723
Viun2g00090 641 MobiDBLite consensus disorder prediction 223 245 - -
Viun2g00090 641 MobiDBLite consensus disorder prediction 23 85 - -
Viun2g00090 641 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 196 IPR000504 GO:0003723
Viun2g00090 641 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 330 IPR000504 GO:0003723
Viun2g00090 641 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 517 574 IPR000504 GO:0003723
Viun2g00090 641 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 404 469 IPR000504 GO:0003723
Viun2g00090 641 MobiDBLite consensus disorder prediction 580 641 - -
Viun2g00090 641 MobiDBLite consensus disorder prediction 359 397 - -
Viun2g00090 641 MobiDBLite consensus disorder prediction 580 602 - -
Viun2g00090 641 SUPERFAMILY RNA-binding domain, RBD 119 213 IPR035979 GO:0003676
Viun2g00090 641 SMART rrm1_1 128 199 IPR000504 GO:0003723
Viun2g00090 641 SMART rrm1_1 401 472 IPR000504 GO:0003723
Viun2g00090 641 SMART rrm1_1 501 577 IPR000504 GO:0003723
Viun2g00090 641 SMART rrm1_1 262 333 IPR000504 GO:0003723
Viun2g00090 641 Gene3D - 217 347 IPR012677 -
Viun2g00090 641 Gene3D - 348 488 IPR012677 -
Viun2g00090 641 Gene3D - 19 213 IPR012677 -
Viun2g00090 641 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 28 252 - -
Viun2g00090 641 SUPERFAMILY RNA-binding domain, RBD 392 489 IPR035979 GO:0003676
Viun2g00090 641 SUPERFAMILY RNA-binding domain, RBD 487 609 IPR035979 GO:0003676
Viun2g00090 641 Gene3D - 489 610 IPR012677 -
Viun2g00090 641 MobiDBLite consensus disorder prediction 23 78 - -
Viun2g00090 641 FunFam Nucleolin 2 485 626 - -
Viun2g00090 641 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 220 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00090 Viun-Chr2 2075084 2093124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00090 262 552 Eukaryotic Initiation Factors Gene Family AT4G34110 21.477 7.91e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00090 - - vun:114173183 1240.71