Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00089 ATGGAGAATAATTCAGATCTTGAAGCTGGCGCTGCTGCTGTGTTACTTCTCCAAATTGGCAAGAGAGAGGGAGAGATTGAAGATGAGCCACAAGAGAGTGCAAAGAAGCAAAAGACAGATGAGGTTGCTGAGGAGCAAAGGAATAAGGACGAAATTGTTTCAGACAATTCCTTTTCAGATTCTGATCCAGATATGGGGCATATGGATATTCACGATGGTTATAATTCTGAAGAAAGTGATGAAGCAACACAGGAAGAGATGGATGCTTTGCCCGTAATGAGTTCAGAGAATAGTGTGGAAGGAATTGAAGAAGAAGACTCTAAAACGCCTCGAGATGCTAGAATGCTATCTACAATGAATGAACAATATGCTGGATCAAGGACTATATGTACTAAAAACTTGTCATACAGTGTGGAACGCACTGATTTGGAAGATCTTTTCAAAGATTGTGGAGAAATTGTTGATATTCGTCTACACTTAGACAGTGAAGGGAGGTTCAGAGGCTTTGGACATATTGAGTTTGCATCGGCAGAAGCAGCACAAAAAGCTCTTCGGTTAAATTATACAGAACTGTTGAGATGCCGAATGAGAATTCGTTTGGCTCCACAAAGGCATAAGTATACTTCCAATAGAAGTTTACATGTTAATCCTAGCAACTCAATTATTCAAAGGACTGAAAAAACGCAGCCAATGAAAGGTTCAGAGCCTTCATTGGACTATGAACAAGAAGCTCAGTCAAAAATGCACTCTACCTTGGAAGCACAGAAGGCTACGTCAGAGACAATATATGTTGCAAACTTGTCATACAGTGCGGAGCAGACTGATATGGAGTTCCTTTTCAAGGAGTGTGGAGAAATTGTCGATATTCGCCTACATACCGATGATAAAGGGCTGTTTAAGGGATATGCACATGTTAAGTTCGCAACTGCAGAAGCTGCACAAAAAGCTGTTGAATTGAATGGTACAATACATTTGGGACGTTGCCTTAGAGTTGAAATAGCCCATGAAAAGGGTGAATATGGCTCCAACAAAAGCAACTGGAGCAAGTCTATCCTAAAGAGTGAAATAAGTCAGTCCACCGAAAGTTCAAAGAGTTTACAGCACCATGACGAAGAGATTGAGGGAAAAGCCTCCGGATTTCCTTGCGAAAGTTCTACAAGGCTACCTACTTTGGAAGAACAAAATGGTCCATCAAAGACAATAAATGTCAGAAACTTGTCATACAGTGTGGAACGGGCTGATATGGTGTACTTTTTCGGAAAATGTGGAAAAATTGTTGATGTTCGTCTGCATATGGATCACAAAGGGAGGTTTAATGGCTTTGGGCAAGTTAAGTTTGCTACTGCTGAAGCTGCAATAAAAGCTGTTGAGTTAGATAATACAGAATTGTTGCAACGTCACATTCGAGTTGATTTGGCCGAAGAAAAAGGTCAACATGCCCATAATCGAAGCAACTGGAGCAGCATGTTTCAGAATTGTGAAAGAGATCAGTCTCCAATTATATATGTGAGGGGTTTCAATCGTTCCCTTCCAGTAGAAGAGATAAAAGCTAGCCTAGAGAAGCATTTTGGTTCTTGTGGAGAGATTGTAAGGATATCAATTCCAAAATGTCGTGAGTCTGGTGATGTTAAGGGGTTTGCTCACTTGGAGTTCAACCATGTTGCTTGTGTGAATAAAGCTCTACATCTTGATGAGAGTGAGTTTGGAGGTTATCGCTTGACAGTTGAAAAGGAAAAGCCTCGGCGTGAGAACCGAGGTATACGCGGTGGAAGAGGTGGAAGAGGAGGTGGTCGTCGTGAATTTGGTGGAAGAGATGGCAGTGGTTATAGCAGCAAAGTTGATTGGGGGAGAAGTAGTGGTCGTGGGTGGCATTCTCTTCATTTTTCTGATGAAAGCACGGGGAGGAAAAACCAATTTCAGTGA 1923 0.416 MENNSDLEAGAAAVLLLQIGKREGEIEDEPQESAKKQKTDEVAEEQRNKDEIVSDNSFSDSDPDMGHMDIHDGYNSEESDEATQEEMDALPVMSSENSVEGIEEEDSKTPRDARMLSTMNEQYAGSRTICTKNLSYSVERTDLEDLFKDCGEIVDIRLHLDSEGRFRGFGHIEFASAEAAQKALRLNYTELLRCRMRIRLAPQRHKYTSNRSLHVNPSNSIIQRTEKTQPMKGSEPSLDYEQEAQSKMHSTLEAQKATSETIYVANLSYSAEQTDMEFLFKECGEIVDIRLHTDDKGLFKGYAHVKFATAEAAQKAVELNGTIHLGRCLRVEIAHEKGEYGSNKSNWSKSILKSEISQSTESSKSLQHHDEEIEGKASGFPCESSTRLPTLEEQNGPSKTINVRNLSYSVERADMVYFFGKCGKIVDVRLHMDHKGRFNGFGQVKFATAEAAIKAVELDNTELLQRHIRVDLAEEKGQHAHNRSNWSSMFQNCERDQSPIIYVRGFNRSLPVEEIKASLEKHFGSCGEIVRISIPKCRESGDVKGFAHLEFNHVACVNKALHLDESEFGGYRLTVEKEKPRRENRGIRGGRGGRGGGRREFGGRDGSGYSSKVDWGRSSGRGWHSLHFSDESTGRKNQFQ 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00089 640 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 28 246 - -
Viun2g00089 640 MobiDBLite consensus disorder prediction 358 396 - -
Viun2g00089 640 FunFam Nucleolin 2 484 625 - -
Viun2g00089 640 MobiDBLite consensus disorder prediction 23 85 - -
Viun2g00089 640 SMART rrm1_1 261 332 IPR000504 GO:0003723
Viun2g00089 640 SMART rrm1_1 128 199 IPR000504 GO:0003723
Viun2g00089 640 SMART rrm1_1 500 576 IPR000504 GO:0003723
Viun2g00089 640 SMART rrm1_1 400 471 IPR000504 GO:0003723
Viun2g00089 640 SUPERFAMILY RNA-binding domain, RBD 486 608 IPR035979 GO:0003676
Viun2g00089 640 SUPERFAMILY RNA-binding domain, RBD 255 343 IPR035979 GO:0003676
Viun2g00089 640 SUPERFAMILY RNA-binding domain, RBD 119 213 IPR035979 GO:0003676
Viun2g00089 640 Gene3D - 486 615 IPR012677 -
Viun2g00089 640 MobiDBLite consensus disorder prediction 579 640 - -
Viun2g00089 640 Gene3D - 19 213 IPR012677 -
Viun2g00089 640 Gene3D - 217 346 IPR012677 -
Viun2g00089 640 Gene3D - 347 485 IPR012677 -
Viun2g00089 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 336 IPR000504 GO:0003723
Viun2g00089 640 MobiDBLite consensus disorder prediction 579 601 - -
Viun2g00089 640 SUPERFAMILY RNA-binding domain, RBD 391 488 IPR035979 GO:0003676
Viun2g00089 640 MobiDBLite consensus disorder prediction 23 78 - -
Viun2g00089 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 403 468 IPR000504 GO:0003723
Viun2g00089 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 196 IPR000504 GO:0003723
Viun2g00089 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 329 IPR000504 GO:0003723
Viun2g00089 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 516 573 IPR000504 GO:0003723
Viun2g00089 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 499 580 IPR000504 GO:0003723
Viun2g00089 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 399 475 IPR000504 GO:0003723
Viun2g00089 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 220 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00089 Viun-Chr2 2075084 2094094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00089 262 552 Eukaryotic Initiation Factors Gene Family AT2G36660 25.503 1.03e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00089 - - vun:114173183 1234.17